viirs_edr.sh

#!/bin/bash
# $Id$
#
# Wrapper script for adl_viirs_edr.py, which runs the 
# CSPP VIIRS EDR package.
#
# Environment settings:
# CSPP_RT_HOME : the location of the CSPP_RT directory
#
# Copyright 2011-2012, University of Wisconsin Regents.
# Licensed under the GNU GPLv3.

if [ -z "$CSPP_EDR_HOME" ]; then
    echo "CSPP_EDR_HOME is not set, but is required for this script to operate."
    exit 9
fi

. ${CSPP_EDR_HOME}/cspp_edr_runtime.sh

#
# Gather the various command line options...
#

INPUT_FILES_OPT=
ALG_OPT=
WORK_DIR_OPT=
SKIP_SDR_UNPACK_OPT=
SKIP_ANCILLARY_OPT=
SKIP_ALGORITHM_OPT=
ANC_ENDIANNESS_OPT=
SDR_ENDIANNESS_OPT=
DEBUG_OPT=
CHAIN_OPT=
PROC_OPT=
VERBOSITY_OPT=
ZIP_OPT=
AGGREGATE_OPT=

#echo $@

OPTS=`getopt -o "i:w:p:dvhaz" -l "input_files:,alg:,work_directory:,processors:,anc_endianness:,sdr_endianness:,skip_sdr_unpack,skip_aux_linking,skip_ancillary,skip_algorithm,zip,aggregate,no_dummy_granules,debug,no_chain,verbose,help" -- "$@"`

# If returncode from getopt != 0, exit with error.
if [ $? != 0 ]
then
    echo "There was an error with the command line parameters to viirs_edr.sh, aborting..."
    exit 1
fi

# A little magic
eval set -- "$OPTS"

# Now go through all the options
haveFlag=0
helpFlag=0
usageFlag=0

while true ;
do
    case "$1" in
        -i|--input_files)
            INPUT_FILES_OPT="--input_files=$2"
            #echo "Setting INPUT_FILES_OPT"
            haveFlag=1
            shift 2;;

        --alg)
            ALG_OPT="--alg=$2"
            #echo "Setting ALG_OPT"
            haveFlag=1
            shift 2;;

        -w|--work_directory)
            WORK_DIR_OPT="--work_directory=$2"
            #echo "Setting WORK_DIR_OPT"
            haveFlag=1
            shift 2;;

        --sdr_endianness)
            SDR_ENDIANNESS_OPT="--sdr_endianness=$2"
            #echo "Setting SDR_ENDIANNESS_OPT"
            haveFlag=1
            shift 2;;

        --anc_endianness)
            ANC_ENDIANNESS_OPT="--anc_endianness=$2"
            #echo "Setting ANC_ENDIANNESS_OPT"
            haveFlag=1
            shift 2;;

        -p|--processors)
            PROC_OPT="--processors=$2"
            #echo "Setting PROC_OPT"
            haveFlag=1
            shift 2;;

        --skip_sdr_unpack)
            SKIP_SDR_UNPACK_OPT="--skip_sdr_unpack"
            #echo "Setting SKIP_SDR_UNPACK_OPT"
            haveFlag=1
            shift ;;

        --skip_aux_linking)
            SKIP_AUX_LINKING_OPT="--skip_aux_linking"
            #echo "Setting SKIP_AUX_LINKING_OPT"
            haveFlag=1
            shift ;;

        --skip_ancillary)
            SKIP_ANCILLARY_OPT="--skip_ancillary"
            #echo "Setting SKIP_ANCILLARY_OPT"
            haveFlag=1
            shift ;;

        --skip_algorithm)
            SKIP_ALGORITHM_OPT="--skip_algorithm"
            #echo "Setting SKIP_ALGORITHM_OPT"
            haveFlag=1
            shift ;;

        -a|--aggregate)
            AGGREGATE_OPT="--aggregate"
            #echo "Setting AGGREGATE_OPT"
            haveFlag=1
            shift ;;

        -z|--zip)
            ZIP_OPT="--zip"
            #echo "Setting ZIP_OPT"
            haveFlag=1
            shift ;;

        --no_dummy_granules)
            NO_DUMMY_OPT="--no_dummy_granules"
            #echo "Setting NO_DUMMY_OPT"
            haveFlag=1
            shift ;;

        -d|--debug)
            DEBUG_OPT="--debug"
            #echo "Setting DEBUG_OPT"
            haveFlag=1
            shift ;;

        --no_chain)
            CHAIN_OPT="--no_chain"
            #echo "Setting DEBUG_OPT"
            haveFlag=1
            shift ;;

        -v|--verbose)
            VERBOSITY_OPT="-"$(echo $VERBOSITY_OPT | sed s#-##)"v"
            #echo "Setting VERBOSITY_OPT"
            haveFlag=1
            shift ;;

        -h|--help)
            if [[ $haveFlag -eq 0 ]];
            then
                helpFlag=1
            fi
            shift;
            break ;;

        --)
            if [[ $haveFlag -eq 0 ]];
            then
                usageFlag=1
            fi
            shift;
            break;;

    esac
done

if [[ $helpFlag -eq 1 ]];
then
    $PY $CSPP_EDR_HOME/viirs/adl_viirs_edr.py -h
    exit 0
fi
if [[ $usageFlag -eq 1 ]];
then
    $PY $CSPP_EDR_HOME/viirs/adl_viirs_edr.py -h
    exit 0
fi

#echo "INPUT_FILES_OPT      = "$INPUT_FILES_OPT
#echo "ALG_OPT              = "$ALG_OPT
#echo "WORK_DIR_OPT         = "$WORK_DIR_OPT
#echo "SKIP_SDR_UNPACK_OPT  = "$SKIP_SDR_UNPACK_OPT
#echo "SKIP_AUX_LINKING_OPT = "$SKIP_AUX_LINKING_OPT
#echo "SKIP_ANCILLARY_OPT   = "$SKIP_ANCILLARY_OPT
#echo "SKIP_ALGORITHM_OPT   = "$SKIP_ALGORITHM_OPT
#echo "NO_DUMMY_OPT         = "$NO_DUMMY_OPT
#echo "SDR_ENDIANNESS_OPT   = "$SDR_ENDIANNESS_OPT
#echo "ANC_ENDIANNESS_OPT   = "$ANC_ENDIANNESS_OPT
#echo "DEBUG_OPT            = "$DEBUG_OPT
#echo "CHAIN_OPT            = "$CHAIN_OPT
#echo "VERBOSITY_OPT        = "$VERBOSITY_OPT


GDB=''
#GDB='gdb --args'
#$GDB $PY $CSPP_RT_HOME/viirs/edr/adl_viirs_edr.py \


#echo "$PY $CSPP_EDR_HOME/viirs/edr/adl_viirs_edr.py \
    #$INPUT_FILES_OPT \
    #$ALG_OPT \
    #$WORK_DIR_OPT \
    #$SKIP_SDR_UNPACK_OPT \
    #$SKIP_AUX_LINKING_OPT \
    #$SKIP_ANCILLARY_OPT \
    #$SKIP_ALGORITHM_OPT \
    #$NO_DUMMY_OPT \
    #$SDR_ENDIANNESS_OPT \
    #$ANC_ENDIANNESS_OPT \
    #$DEBUG_OPT \
    #$VERBOSITY_OPT
#"

#exit 1

$PY $CSPP_EDR_HOME/viirs/adl_viirs_edr.py \
    $INPUT_FILES_OPT \
    $ALG_OPT \
    $WORK_DIR_OPT \
    $SKIP_SDR_UNPACK_OPT \
    $SKIP_AUX_LINKING_OPT \
    $SKIP_ANCILLARY_OPT \
    $AGGREGATE_OPT \
    $ZIP_OPT \
    $SKIP_ALGORITHM_OPT \
    $NO_DUMMY_OPT \
    $SDR_ENDIANNESS_OPT \
    $ANC_ENDIANNESS_OPT \
    $DEBUG_OPT \
    $CHAIN_OPT \
    $PROC_OPT \
    $VERBOSITY_OPT -vv

##############################
#         Packaging          #
##############################

#bash $CSPP_RT_HOME/../CSPP_RT_repo/trunk/scripts/edr/CSPP_RT_ViirsEdrMasks_Package.sh  $CSPP_RT_HOME/viirs/edr/viirs_edr.sh ../../sample_data/viirs/edr/input/VIIRS_OPS_unpackTest/HDF5/