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Alessandro De Luca edited this page May 3, 2024 · 10 revisions

SPREAD, Spatiotemporal Pathogen Relationships and Epidemiological Analysis Dashboard



Description

The project is based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata. Please see more info here.

The idea was to extend the original project in order to conducts spatio-temporal analyses with an integrated geographic information system (GIS) as well as a data visualization system across time. The web application allows users to upload geographic coordinates and temporal data related to each sample and allows to display them reflecting the selection in the tree on the map and vice versa, and reproducing a timelapse visualization both in the map and in the tree.

Use SPREAD

You can download the project and easly running it locally, but we provide also a ready to use version freely available following link below:

Please note, you can load sensitive data, your dataset is visualised client-side in the browser. No data is transmitted, and no tracking cookies are used. The only data downloaded from the internet are the visualisation (JavaScript) code, fonts and map tiles.

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