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Restore and update PAINT GOREF #2131

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pgaudet opened this issue Oct 24, 2023 · 4 comments
Open

Restore and update PAINT GOREF #2131

pgaudet opened this issue Oct 24, 2023 · 4 comments

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@pgaudet
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pgaudet commented Oct 24, 2023

Using the PMID for PAINT is not clear to many groups, so I have restored GOREF_0000033 and updated it

The Phylogenetic ANnotation using Gene Ontology (PAN-GO) method annotates evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. The GO terms are manually selected by a curator and used to annotate ancestral genes in the phylogenetic tree using the evidence code IBA (Inferred from Biological Ancestor). All supporting annotations must be based on experimental data from the scientific literature. The PAN-GO annotations are fully traceable from the data in the 'with/from' column of the annotation, which provides the PANTHER node ID (PTN) from which the annotation is derived, as well as all descendants sequences that support the annotation of the ancestral node.
The full method is described in PMID:21873635.

Thanks, Pascale

@pgaudet pgaudet self-assigned this Oct 24, 2023
@pgaudet
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pgaudet commented Oct 24, 2023

Done in #2128

@kltm
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kltm commented Oct 24, 2023

@pgaudet Every issue gets a project--which one should this be in?

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kltm commented Oct 24, 2023

@pgaudet guessing QC.

@kltm kltm reopened this Nov 14, 2023
@kltm kltm moved this from Done to Working in Ongoing data QC and pipeline maintenance Nov 14, 2023
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kltm commented Nov 14, 2023

pantherdb/fullgo_paint_update#58
Likely an easy fix. @pgaudet changes like this need a little more coordination.

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