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Boehringer Ingelheim Pharma GmbH & Co. KG
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A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…
Joyplots in Python with matplotlib & pandas 📈
Episcanpy: Epigenomics Single Cell Analysis in Python
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Convert between AnnData and SingleCellExperiment
Mapping out the coarse-grained connectivity structures of complex manifolds.
Single-cell analysis in Python. Scales to >1M cells.
python module to plot beautiful and highly customizable genome browser tracks
A python extension for quick access to bigWig and bigBed files
Log command line events to a graph database :)
Official git repository for Biopython (originally converted from CVS)
Rna-seq pipeline, From FASTQ to differential expression analysis...
q - Run SQL directly on delimited files and multi-file sqlite databases
EpiExplorer is a web tool that allows you to use large reference epigenome datasets for your own analysis without complex scripting or laborous preprocessing.
Tools to process and analyze deep sequencing data.