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Diann wrapper Snakefile fails on missing irrelevant paramater #12

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fburic opened this issue Mar 29, 2021 · 0 comments
Open

Diann wrapper Snakefile fails on missing irrelevant paramater #12

fburic opened this issue Mar 29, 2021 · 0 comments
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@fburic
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fburic commented Mar 29, 2021

Thescripts/quantification/diann.Snakefile script tries to read the diann_library config parameter, even when it is run in normal mode (the parameter is only required for a DIA-NN library-free search). The script crashes if this parameter is not specified in the config file.

Workaround:

Add diann_library: "results/diann/dummy.tsv" to prevent the script from crashing. (The dummy file won't be created.)

@fburic fburic self-assigned this Mar 29, 2021
@fburic fburic added bug Something isn't working priority: low labels Mar 29, 2021
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