This is an attempt to clean up an analysis of 366 isolates of Sclerotinia sclerotiorum from the US and various countries around the world.

The manuscript has mostly been written, but it still needs some cleaning:

Population structure and phenotypic variation of Sclerotinia sclerotiorum from dry bean in the United States

Z. N. Kamvar, B. S. Amaradasa, R. Jhala, J. Steadman, and S. E. Everhart

The analyses are arranged in the following order according to the Makefile:

1. table-1.md
2. MCG-virulence.md
3. locus-stats.md
4. MLG-distribution.md
5. mlg-mcg.md
6. RDA-analysis.md
7. pop-diff.md
8. tree.md
9. wmn-differentiation.md
10. by-year.md