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chain_sim()'s help file has been updated with more details. In particular,
we describe in detail how to specify the serial argument as a function. We
have also added more examples.
A new vignette describing how to project COVID-19 incidence with chain_sim()
has been added and can be accessed on the bpmodels website under "Articles".
The README's "quick start" section has been updated with what was
previously the introduction vignette.
Minor functionality change
chain_sim() now throws a warning, instead of an error, when tree is set
to FALSE with serial also specified. Providing a serial interval implicitly
means you want the tree of transmissions to be simulated, so chain_sim()
internally sets tree = TRUE and throws a warning explaining what happened.
This behaviour should not break any simulations with previous versions
with bpmodels, but if it does, please submit an issue.
To remove the warning, the user should explicitly set tree = TRUE when
they specify serial.
This discussion was created from the release bpmodels 0.2.0.
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Documentation
chain_sim()
's help file has been updated with more details. In particular,we describe in detail how to specify the
serial
argument as a function. Wehave also added more examples.
A new vignette describing how to project COVID-19 incidence with
chain_sim()
has been added and can be accessed on the
bpmodels website under "Articles".
The README's "quick start" section has been updated with what was
previously the introduction vignette.
Minor functionality change
chain_sim()
now throws a warning, instead of an error, whentree
is setto
FALSE
withserial
also specified. Providing a serial interval implicitlymeans you want the tree of transmissions to be simulated, so
chain_sim()
internally sets
tree = TRUE
and throws a warning explaining what happened.This behaviour should not break any simulations with previous versions
with
bpmodels
, but if it does, please submit an issue.To remove the warning, the user should explicitly set
tree = TRUE
whenthey specify
serial
.This discussion was created from the release bpmodels 0.2.0.
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