AF2 structure/embedding for Stability (Fitness) task is not available.

[luwei0917]

Hello,
Interesting work. Could you provide the AF2 embedding for the 60,000+ sequences in the stability task? (the dataset from TAPE's github only contains the sequences)
It would be even better if the corresponding AF2 structures for those sequences are also available.
generating those again will be a waste of resources and error prone if we are using different database/setting.

Thanks.

[elttaes]

Hi,
This part of embedding I can given you in the next few days. But the structure module's parameter does not be finetuned. I don't know whether this embedding after being finetuned can generate a useful structure.

[elttaes]

Hi,
The embedding has been uploaded to https://drive.google.com/drive/folders/19lPfA_pNelKHdkIIUXtv_IZ-1U018l_F.