浙江大学课程攻略共享计划

The Reliable USB Formatting Utility

💻 Democratizing Snippet Management (macOS/Win/Linux)

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

MyBatis SQL mapper framework for Java

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

parallel-fastq-dump implementation in bash script

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

MACA: Marker-based automatic cell-type annotation for single cell expression data

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

A plugin for Microsoft.EntityFrameworkCore to support repository, unit of work patterns, multiple database with distributed transaction supported, and MySQL multiple databases/tables sharding suppo…

A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data

A scanpy extension to analyse single-cell TCR and BCR data.

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

🎯 ChIP peak Annotation, Comparison and Visualization

A quality control analysis tool for high throughput sequencing data

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

A TCP port redirector for UNIX

Better font rendering for Windows.

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

A SingleCell RNASeq pre-processing snakemake workflow

Public facing deeplift repo

⏬ Dumb downloader that scrapes the web

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

Paper and implementation of UNet-related model.

The Elements of Statistical Learning (ESL)的中文翻译、代码实现及其习题解答。

Reading list for research topics in multimodal machine learning