- Implemented an analysis for obtaining UMAP embeddings from a gene expression matrix. It is
found in
cell2cell.external.umap.run_umap()
. - Implemented UMAP biplot to visualize UMAP embeddings. It is found in
cell2cell.plotting.umap_plot.umap_biplot()
- Implemented functions to subset an InteractionTensor by lists of names of the elements in any
of the tensor dimensions.
- Function
cell2cell.tensor.subset.subset_tensor()
to subset an InteractionTensor, powered by the functioncell2cell.tensor.subset.find_element_indexes()
to find where each element name is located in the tensor. - Function
cell2cell.tensor.subset.subset_metadata()
to subset the metadata generated withcell2cell.tensor.tensor.generate_tensor_metadata()
. It makes the metadata to contain only elements contained in an InteractionTensor of reference.
- Function
- umap-learn