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0.5.6-notes.md

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Release Notes - cell2cell v0.5.6

New features

  • Implemented an analysis for obtaining UMAP embeddings from a gene expression matrix. It is found in cell2cell.external.umap.run_umap().
  • Implemented UMAP biplot to visualize UMAP embeddings. It is found in cell2cell.plotting.umap_plot.umap_biplot()
  • Implemented functions to subset an InteractionTensor by lists of names of the elements in any of the tensor dimensions.
    • Function cell2cell.tensor.subset.subset_tensor() to subset an InteractionTensor, powered by the function cell2cell.tensor.subset.find_element_indexes() to find where each element name is located in the tensor.
    • Function cell2cell.tensor.subset.subset_metadata() to subset the metadata generated with cell2cell.tensor.tensor.generate_tensor_metadata(). It makes the metadata to contain only elements contained in an InteractionTensor of reference.

Dependency Update

  • umap-learn