Ontologizer Dependencies

[stuppie]

Hello, if you could assist me with getting your project to build it would be greatly appreciated. I'm having trouble locating the correct ontologizer dependencies. I see the ontologizerlib repo, but it does not contain many things that this project is looking for, for example ontologizer.association.AssociationParser, ontologizer.go.OBOParser, and I can't figure out where they are. Could you point me to them? Thanks

[stuppie]

Ok, I managed to find this repo: https://github.com/phenotips/ontologizer
Its still missing ontologizer.association.AssociationParser.Type however..
And many methods are inconsistent. It has oboParser.getFormatVersion() but is missing oboParser.getDataVersion(), for example.

[drseb]

add this to your pom may work:

<!-- <dependency> -->
		<!-- <groupId>ontologizer</groupId> -->
		<!-- <artifactId>ontologizer</artifactId> -->
		<!-- <version>0.0.3-SNAPSHOT</version> -->
		<!-- </dependency> -->

and

<repositories>
		<repository>
			<id>compbio</id>
			<url>https://compbio.charite.de/tl_files/maven</url>
		</repository>
	</repositories>

the code of this ontologizer-fork is here: https://github.com/drseb/ontologizer