Commits

Commits on Feb 14, 2024

fixed CSIDE bug and prepare vignettes for package build
dmcable
committedFeb 14, 2024

Commits on Dec 13, 2023

fixed medv issue and region checking
dmcable
committedDec 13, 2023

Commits on Nov 24, 2023

Merge pull request #182 from dmcable/update
dmcable
committedNov 24, 2023
updated manual, added warning, and added source for vignette 4
dmcable
committedNov 24, 2023

Commits on Jun 6, 2023

Commits on Jun 5, 2023

Update README.md (dropbox repo link)
dmcable
committedJun 5, 2023

Commits on Apr 25, 2023

fix critical error: Q_mat -> SQ_mat
dmcable
committedApr 25, 2023

Commits on Apr 13, 2023

bump vno
dmcable
committedApr 13, 2023
add metafor package
dmcable
committedApr 13, 2023

Commits on Apr 4, 2023

Merge pull request #144 from simoncmo/subset-function
dmcable
committedApr 4, 2023

Commits on Mar 15, 2023

Adding a utility function to subset RCTD/spacexr object based on spatial barcodes
simoncmo
committedMar 15, 2023

Commits on Feb 22, 2023

Merge branch 'master' of https://github.com/dmcable/spacexr into update
dmcable
committedFeb 22, 2023
add answer to faq and installation timeout
dmcable
committedFeb 22, 2023

Commits on Feb 7, 2023

Update runRCTD.R
dmcable
committedFeb 7, 2023

Commits on Feb 3, 2023

update merge_RCTD_objects
dmcable
committedFeb 3, 2023

Commits on Feb 2, 2023

v2.2.0: meta regression across samples
dmcable
committedFeb 2, 2023

Commits on Jan 26, 2023

Update CSIDE_utils.R
dmcable
committedJan 26, 2023

Commits on Jan 9, 2023

fix cell_type_info bug in run.CSIDE.general
dmcable
committedJan 9, 2023

Commits on Jan 2, 2023

choose_cell_types: detect error in insufficient counts
dmcable
committedJan 2, 2023

Commits on Dec 17, 2022

CSIDE length cell_types typo
dmcable
committedDec 17, 2022
CSIDE population inference handle case where cell types are not present across all samples
dmcable
committedDec 17, 2022
fix SQ_mat parallel error
dmcable
committedDec 17, 2022

Commits on Dec 16, 2022

C-SIDE one cell type case functionality
dmcable
committedDec 16, 2022
fix calc_Q_k error
dmcable
committedDec 16, 2022

Commits on Dec 14, 2022

update readme with news for 2.1.0
dmcable
committedDec 14, 2022
fix typo sigma_init in CSIDE
dmcable
committedDec 14, 2022
fix parallel bug RCTD SQ_mat
dmcable
committedDec 14, 2022
parallel compatibility and Rfast dependency
dmcable
committedDec 14, 2022
update documentation of Reference
dmcable
committedDec 14, 2022
bump version
dmcable
committedDec 14, 2022
fix RCTD load Q_mat bug
dmcable
committedDec 14, 2022

Commits on Dec 13, 2022

major update: change Q_mat interpolation from linear to cubic spline for improved numerical performance and speed. Several other substantial speed improvements to C-SIDE
dmcable
committedDec 13, 2022