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IO performance #46
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The updated
mitos-benchmarks/MIToS
benchmark shows small regression inread
/write
of MSA for Julia 1.0.2 and MIToS 2.3.1. Maybe, it's related to the use oflength(::String)
: https://discourse.julialang.org/t/performance-of-length-string/12672Also,
@profile
shows that most of the time is spent in cache inefficient access to the big MSA matrix:setindex!
in_convert_to_matrix_residues
.Maybe https://github.com/JuliaArrays/TiledIteration.jl or using 8 bits instead of 32/64 bits for
Residue
can help to avoid cache related problems.The text was updated successfully, but these errors were encountered: