querier.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Run stargeo queries for hetio-ind diseases"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import logging\n",
    "import os\n",
    "import gzip\n",
    "\n",
    "import pandas\n",
    "import easydict\n",
    "\n",
    "import starapi.analysis\n",
    "import starapi.conf"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "starapi.analysis.logger.propagate = False\n",
    "starapi.conf.configure('data')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>slim_id</th>\n",
       "      <th>slim_name</th>\n",
       "      <th>case_query</th>\n",
       "      <th>control_query</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>DOID:0050156</td>\n",
       "      <td>idiopathic pulmonary fibrosis</td>\n",
       "      <td>IPF == 'IPF'</td>\n",
       "      <td>IPF_control == 'IPF_control'</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>DOID:0050741</td>\n",
       "      <td>alcohol dependence</td>\n",
       "      <td>alcoholism == 'alcoholism'</td>\n",
       "      <td>alcoholism_control == 'alcoholism_control'</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>DOID:0050742</td>\n",
       "      <td>nicotine dependence</td>\n",
       "      <td>Smoker == 'Smoker'</td>\n",
       "      <td>Smoker_control == 'Smoker_control'</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>DOID:1024</td>\n",
       "      <td>leprosy</td>\n",
       "      <td>borderline_leprosy == 'borderline_leprosy' or ...</td>\n",
       "      <td>leprosy_control == 'leprosy_control'</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>DOID:10283</td>\n",
       "      <td>prostate cancer</td>\n",
       "      <td>PC == 'PC'</td>\n",
       "      <td>PC_control == 'PC_control' or PC_tissue_contro...</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "        slim_id                      slim_name  \\\n",
       "0  DOID:0050156  idiopathic pulmonary fibrosis   \n",
       "1  DOID:0050741             alcohol dependence   \n",
       "2  DOID:0050742            nicotine dependence   \n",
       "3     DOID:1024                        leprosy   \n",
       "4    DOID:10283                prostate cancer   \n",
       "\n",
       "                                          case_query  \\\n",
       "0                                       IPF == 'IPF'   \n",
       "1                         alcoholism == 'alcoholism'   \n",
       "2                                 Smoker == 'Smoker'   \n",
       "3  borderline_leprosy == 'borderline_leprosy' or ...   \n",
       "4                                         PC == 'PC'   \n",
       "\n",
       "                                       control_query  \n",
       "0                       IPF_control == 'IPF_control'  \n",
       "1         alcoholism_control == 'alcoholism_control'  \n",
       "2                 Smoker_control == 'Smoker_control'  \n",
       "3               leprosy_control == 'leprosy_control'  \n",
       "4  PC_control == 'PC_control' or PC_tissue_contro...  "
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "query_df = pandas.read_table('data/queries.tsv')\n",
    "query_df.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_0050156 analysis\n",
      "/home/dhimmels/anaconda3/envs/stargeo/lib/python2.7/site-packages/pandas/core/indexing.py:115: SettingWithCopyWarning: \n",
      "A value is trying to be set on a copy of a slice from a DataFrame\n",
      "\n",
      "See the the caveats in the documentation: http:https://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n",
      "  self._setitem_with_indexer(indexer, value)\n",
      "915.86 ms in get_analysis_df(\"IPF == 'IPF'\", \"IPF_control == 'IPF_c..., '')\n",
      "920.37 ms in Loading dataframe for DOID_0050156\n",
      "Matching sources: 12\n",
      "Stats: 12 sources, 12 series, 8 platforms, 679 samples\n",
      "Loading data and calculating fold change for DOID_0050156\n",
      "Loading data for GSE10667, id = 179\n",
      "733.09 ms in get_probes(10)\n",
      " 18.13 s in load_gse( series_id platform_id..., 179, False)\n",
      "/home/dhimmels/Documents/serg/rephetio/construct/star_api/starapi/analysis.py:168: SettingWithCopyWarning: \n",
      "A value is trying to be set on a copy of a slice from a DataFrame.\n",
      "Try using .loc[row_indexer,col_indexer] = value instead\n",
      "\n",
      "See the the caveats in the documentation: http:https://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n",
      "  samples['subset'] = \"NA\"\n",
      "  3.45 s in get_gene_fold_change(<Gse GSE10667>, False, 0, None)\n",
      "Loading data for GSE17978, id = 2072\n",
      "621.34 ms in get_probes(593)\n",
      " 19.05 s in load_gse( series_id platform_id..., 2072, False)\n",
      "  3.02 s in get_gene_fold_change(<Gse GSE17978>, False, 0, None)\n",
      "Loading data for GSE2052, id = 2719\n",
      "279.66 ms in get_probes(687)\n",
      "  3.88 s in load_gse( series_id platform_id..., 2719, False)\n",
      "  1.04 s in get_gene_fold_change(<Gse GSE2052>, False, 0, None)\n",
      "Loading data for GSE24206, id = 3666\n",
      "626.52 ms in get_probes(4)\n",
      " 17.90 s in load_gse( series_id platform_id..., 3666, False)\n",
      "  3.33 s in get_gene_fold_change(<Gse GSE24206>, False, 0, None)\n",
      "Loading data for GSE28042, id = 4602\n",
      "524.96 ms in get_probes(53)\n",
      " 34.31 s in load_gse( series_id platform_id..., 4602, False)\n",
      "  5.57 s in get_gene_fold_change(<Gse GSE28042>, False, 0, None)\n",
      "Loading data for GSE28221, id = 4650\n",
      "506.39 ms in get_probes(53)\n",
      " 33.68 s in load_gse( series_id platform_id..., 4650, False)\n",
      "  5.80 s in get_gene_fold_change(<Gse GSE28221>, False, 0, None)\n",
      "Loading data for GSE31934, id = 5581\n",
      "111.77 ms in get_probes(1004)\n",
      "490.42 ms in load_gse( series_id platform_id..., 5581, False)\n",
      "453.72 ms in get_gene_fold_change(<Gse GSE31934>, False, 0, None)\n",
      "Loading data for GSE33566, id = 5969\n",
      "544.43 ms in get_probes(53)\n",
      " 23.24 s in load_gse( series_id platform_id..., 5969, False)\n",
      "  4.69 s in get_gene_fold_change(<Gse GSE33566>, False, 0, None)\n",
      "Loading data for GSE35145, id = 6333\n",
      "526.27 ms in get_probes(674)\n",
      "  7.53 s in load_gse( series_id platform_id..., 6333, False)\n",
      "  1.94 s in get_gene_fold_change(<Gse GSE35145>, False, 0, None)\n",
      "Loading data for GSE38958, id = 7205\n",
      "539.93 ms in get_probes(280)\n",
      " 26.03 s in load_gse( series_id platform_id..., 7205, False)\n",
      "  6.33 s in get_gene_fold_change(<Gse GSE38958>, False, 0, None)\n",
      "Loading data for GSE45686, id = 8724\n",
      "526.17 ms in get_probes(674)\n",
      " 23.63 s in load_gse( series_id platform_id..., 8724, False)\n",
      "  3.25 s in get_gene_fold_change(<Gse GSE45686>, False, 0, None)\n",
      "Loading data for GSE53845, id = 12401\n",
      "696.20 ms in get_probes(53)\n",
      " 19.18 s in load_gse( series_id platform_id..., 12401, False)\n",
      "  3.15 s in get_gene_fold_change(<Gse GSE53845>, False, 0, None)\n",
      "273.18 s in Load/fold for DOID_0050156\n",
      "Meta-Analyzing DOID_0050156\n",
      "450.82 s in meta analysis of real data for DOID_0050156\n",
      "981.75 ms in meta analysis of permutations for DOID_0050156\n",
      "204.09 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "452.40 s in Meta analysis for DOID_0050156\n",
      "DONE DOID_0050156 analysis\n",
      "726.74 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0 DOID:0050156 idiopathic pulmonary fibrosis\n",
      "1"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_0050741 analysis\n",
      "935.05 ms in get_analysis_df(\"alcoholism == 'alcoho..., \"alcoholism_control ==..., '')\n",
      "939.27 ms in Loading dataframe for DOID_0050741\n",
      "Matching sources: 8\n",
      "Stats: 8 sources, 8 series, 8 platforms, 435 samples\n",
      "Loading data and calculating fold change for DOID_0050741\n",
      "Loading data for GSE10356, id = 95\n",
      " 39.47 ms in get_probes(36)\n",
      " 22.10 s in load_gse( series_id platform_id..., 95, False)\n",
      "205.21 ms in get_gene_fold_change(<Gse GSE10356>, False, 0, None)\n",
      "Loading data for GSE20568, id = 2733\n",
      " 42.28 ms in get_probes(689)\n",
      "  2.34 s in load_gse( series_id platform_id..., 2733, False)\n",
      "324.24 ms in get_gene_fold_change(<Gse GSE20568>, False, 0, None)\n",
      "Loading data for GSE29555, id = 5002\n",
      "492.71 ms in get_probes(389)\n",
      " 21.88 s in load_gse( series_id platform_id..., 5002, False)\n",
      "  5.61 s in get_gene_fold_change(<Gse GSE29555>, False, 0, None)\n",
      "Loading data for GSE44456, id = 8480\n",
      "411.77 ms in get_probes(283)\n",
      " 12.21 s in load_gse( series_id platform_id..., 8480, False)\n",
      "  2.61 s in get_gene_fold_change(<Gse GSE44456>, False, 0, None)\n",
      "Loading data for GSE49376, id = 9395\n",
      "386.02 ms in get_probes(789)\n",
      " 11.28 s in load_gse( series_id platform_id..., 9395, False)\n",
      "  2.24 s in get_gene_fold_change(<Gse GSE49376>, False, 0, None)\n",
      "Loading data for GSE53808, id = 10083\n",
      "687.26 ms in get_probes(841)\n",
      " 16.98 s in load_gse( series_id platform_id..., 10083, False)\n",
      "  4.00 s in get_gene_fold_change(<Gse GSE53808>, False, 0, None)\n",
      "Loading data for GSE9058, id = 11639\n",
      " 42.36 ms in get_probes(1630)\n",
      "  3.00 s in load_gse( series_id platform_id..., 11639, False)\n",
      "366.50 ms in get_gene_fold_change(<Gse GSE9058>, False, 0, None)\n",
      "Loading data for GSE52553, id = 12329\n",
      "628.57 ms in get_probes(4)\n",
      " 46.63 s in load_gse( series_id platform_id..., 12329, False)\n",
      "  6.93 s in get_gene_fold_change(<Gse GSE52553>, False, 0, None)\n",
      "161.31 s in Load/fold for DOID_0050741\n",
      "Meta-Analyzing DOID_0050741\n",
      "388.82 s in meta analysis of real data for DOID_0050741\n",
      "487.60 ms in meta analysis of permutations for DOID_0050741\n",
      "135.90 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "389.91 s in Meta analysis for DOID_0050741\n",
      "DONE DOID_0050741 analysis\n",
      "552.36 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:0050741 alcohol dependence\n",
      "2"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_0050742 analysis\n",
      "  1.08 s in get_analysis_df(\"Smoker == 'Smoker'\", \"Smoker_control == 'Sm..., '')\n",
      "  1.08 s in Loading dataframe for DOID_0050742\n",
      "Matching sources: 22\n",
      "Excluded 3 sources as single-class\n",
      "Stats: 19 sources, 17 series, 6 platforms, 1423 samples\n",
      "Loading data and calculating fold change for DOID_0050742\n",
      "Loading data for GSE10006, id = 4\n",
      "631.65 ms in get_probes(4)\n",
      " 45.85 s in load_gse( series_id platform_id..., 4, False)\n",
      "  7.15 s in get_gene_fold_change(<Gse GSE10006>, False, 0, None)\n",
      "Loading data for GSE11784, id = 450\n",
      "649.63 ms in get_probes(4)\n",
      " 85.42 s in load_gse( series_id platform_id..., 450, False)\n",
      " 11.72 s in get_gene_fold_change(<Gse GSE11784>, False, 0, None)\n",
      "Loading data for GSE11906, id = 487\n",
      "632.96 ms in get_probes(4)\n",
      "114.28 s in load_gse( series_id platform_id..., 487, False)\n",
      " 15.96 s in get_gene_fold_change(<Gse GSE11906>, False, 0, None)\n",
      "Loading data for GSE19407, id = 2430\n",
      "667.29 ms in get_probes(4)\n",
      " 64.76 s in load_gse( series_id platform_id..., 2430, False)\n",
      "  3.05 s in get_gene_fold_change(<Gse GSE19407>, False, 0, None)\n",
      "Loading data for GSE20257, id = 2650\n",
      "479.26 ms in get_probes(4)\n",
      " 68.46 s in load_gse( series_id platform_id..., 2650, False)\n",
      " 10.23 s in get_gene_fold_change(<Gse GSE20257>, False, 0, None)\n",
      "Loading data for GSE20568, id = 2733\n",
      " 42.03 ms in get_probes(689)\n",
      "  2.26 s in load_gse( series_id platform_id..., 2733, False)\n",
      "402.85 ms in get_gene_fold_change(<Gse GSE20568>, False, 0, None)\n",
      "Loading data for GSE27272, id = 4446\n",
      "444.34 ms in get_probes(331)\n",
      " 53.00 s in load_gse( series_id platform_id..., 4446, False)\n",
      "  6.65 s in get_gene_fold_change(<Gse GSE27272>, False, 0, None)\n",
      "Loading data for GSE30063, id = 5140\n",
      "629.17 ms in get_probes(4)\n",
      " 50.30 s in load_gse( series_id platform_id..., 5140, False)\n",
      "skipping GPL570: sample ids mismatch\n",
      "145.15 ms in get_gene_fold_change(<Gse GSE30063>, False, 0, None)\n",
      "Loading data for GSE3320, id = 5880\n",
      "390.59 ms in get_probes(2)\n",
      "  3.95 s in load_gse( series_id platform_id..., 5880, False)\n",
      "  1.46 s in get_gene_fold_change(<Gse GSE3320>, False, 0, None)\n",
      "Loading data for GSE4498, id = 8585\n",
      "623.13 ms in get_probes(4)\n",
      " 16.09 s in load_gse( series_id platform_id..., 8585, False)\n",
      "  3.22 s in get_gene_fold_change(<Gse GSE4498>, False, 0, None)\n",
      "Loading data for GSE5056, id = 9571\n",
      "220.70 ms in get_probes(22)\n",
      "  3.29 s in load_gse( series_id platform_id..., 9571, False)\n",
      "915.41 ms in get_gene_fold_change(<Gse GSE5056>, False, 0, None)\n",
      "Loading data for GSE5057, id = 9574\n",
      "392.47 ms in get_probes(2)\n",
      "  3.95 s in load_gse( series_id platform_id..., 9574, False)\n",
      "  1.39 s in get_gene_fold_change(<Gse GSE5057>, False, 0, None)\n",
      "Loading data for GSE5058, id = 9577\n",
      "333.80 ms in get_probes(4)\n",
      " 21.69 s in load_gse( series_id platform_id..., 9577, False)\n",
      "  3.05 s in get_gene_fold_change(<Gse GSE5058>, False, 0, None)\n",
      "Loading data for GSE5059, id = 9580\n",
      "448.12 ms in get_probes(4)\n",
      "  4.71 s in load_gse( series_id platform_id..., 9580, False)\n",
      "  1.18 s in get_gene_fold_change(<Gse GSE5059>, False, 0, None)\n",
      "Loading data for GSE5060, id = 9582\n",
      "627.81 ms in get_probes(4)\n",
      "218.55 ms in get_probes(22)\n",
      "412.39 ms in get_probes(2)\n",
      " 39.71 s in load_gse( series_id platform_id..., 9582, False)\n",
      "  6.91 s in get_gene_fold_change(<Gse GSE5060>, False, 0, None)\n",
      "Loading data for GSE6264, id = 10896\n",
      "411.24 ms in get_probes(78)\n",
      "  9.70 s in load_gse( series_id platform_id..., 10896, False)\n",
      "  1.75 s in get_gene_fold_change(<Gse GSE6264>, False, 0, None)\n",
      "Loading data for GSE8545, id = 11509\n",
      "654.10 ms in get_probes(4)\n",
      " 32.19 s in load_gse( series_id platform_id..., 11509, False)\n",
      "  5.14 s in get_gene_fold_change(<Gse GSE8545>, False, 0, None)\n",
      "706.43 s in Load/fold for DOID_0050742\n",
      "Meta-Analyzing DOID_0050742\n",
      "425.75 s in meta analysis of real data for DOID_0050742\n",
      "  1.65 s in meta analysis of permutations for DOID_0050742\n",
      "139.95 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "428.01 s in Meta analysis for DOID_0050742\n",
      "DONE DOID_0050742 analysis\n",
      "1135.78 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:0050742 nicotine dependence\n",
      "3"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1024 analysis\n",
      "  1.30 s in get_analysis_df(\"borderline_leprosy ==..., \"leprosy_control == 'l..., '')\n",
      "  1.30 s in Loading dataframe for DOID_1024\n",
      "Matching sources: 1\n",
      "Excluded 1 source by min samples\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "  1.45 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1024 leprosy\n",
      "4"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10283 analysis\n",
      "970.33 ms in get_analysis_df(\"PC == 'PC'\", \"PC_control == 'PC_con..., '')\n",
      "974.80 ms in Loading dataframe for DOID_10283\n",
      "Matching sources: 16\n",
      "Excluded 13 sources as single-class\n",
      "Stats: 3 sources, 3 series, 2 platforms, 464 samples\n",
      "Loading data and calculating fold change for DOID_10283\n",
      "Loading data for GSE11682, id = 437\n",
      "683.58 ms in get_probes(10)\n",
      " 21.18 s in load_gse( series_id platform_id..., 437, False)\n",
      "  3.14 s in get_gene_fold_change(<Gse GSE11682>, False, 0, None)\n",
      "Loading data for GSE30994, id = 5362\n",
      "691.05 ms in get_probes(10)\n",
      "  7.43 s in load_gse( series_id platform_id..., 5362, False)\n",
      "  1.85 s in get_gene_fold_change(<Gse GSE30994>, False, 0, None)\n",
      "Loading data for GSE62872, id = 13217\n",
      " 40.58 ms in get_probes(1787)\n",
      " 73.23 s in load_gse( series_id platform_id..., 13217, False)\n",
      "384.08 ms in get_gene_fold_change(<Gse GSE62872>, False, 0, None)\n",
      "108.32 s in Load/fold for DOID_10283\n",
      "Meta-Analyzing DOID_10283\n",
      "330.96 s in meta analysis of real data for DOID_10283\n",
      "222.74 ms in meta analysis of permutations for DOID_10283\n",
      "139.95 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "331.84 s in Meta analysis for DOID_10283\n",
      "DONE DOID_10283 analysis\n",
      "441.33 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10283 prostate cancer\n",
      "5"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10534 analysis\n",
      "688.48 ms in get_analysis_df(\"stomach_cancer_tissue..., \"stomach_cancer_tissue..., '')\n",
      "692.69 ms in Loading dataframe for DOID_10534\n",
      "Matching sources: 2\n",
      "Excluded 1 source as single-class\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "830.04 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10534 stomach cancer\n",
      "6"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10608 analysis\n",
      "602.89 ms in get_analysis_df(\"celiac == 'celiac'\", \"celiac_control == 'ce..., '')\n",
      "607.10 ms in Loading dataframe for DOID_10608\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "741.56 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10608 celiac disease\n",
      "7"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10652 analysis\n",
      "698.75 ms in get_analysis_df(\"AD == 'AD'\", \"AD_Control == 'AD_Con..., '')\n",
      "703.39 ms in Loading dataframe for DOID_10652\n",
      "Matching sources: 4\n",
      "Excluded 2 sources as single-class\n",
      "Stats: 2 sources, 2 series, 2 platforms, 512 samples\n",
      "Loading data and calculating fold change for DOID_10652\n",
      "Loading data for GSE33000, id = 5836\n",
      "603.23 ms in get_probes(297)\n",
      "282.01 s in load_gse( series_id platform_id..., 5836, False)\n",
      " 17.46 s in get_gene_fold_change(<Gse GSE33000>, False, 0, None)\n",
      "Loading data for GSE6613, id = 11004\n",
      "394.15 ms in get_probes(2)\n",
      " 18.90 s in load_gse( series_id platform_id..., 11004, False)\n",
      "  2.58 s in get_gene_fold_change(<Gse GSE6613>, False, 0, None)\n",
      "321.61 s in Load/fold for DOID_10652\n",
      "Meta-Analyzing DOID_10652\n",
      "204.31 s in meta analysis of real data for DOID_10652\n",
      "158.82 ms in meta analysis of permutations for DOID_10652\n",
      "132.08 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "205.10 s in Meta analysis for DOID_10652\n",
      "DONE DOID_10652 analysis\n",
      "527.58 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10652 Alzheimer's disease\n",
      "8"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10763 analysis\n",
      "773.56 ms in get_analysis_df(\"PHT == 'PHT' or hyper..., \"PHT_Control == 'PHT_C..., '')\n",
      "777.83 ms in Loading dataframe for DOID_10763\n",
      "Matching sources: 8\n",
      "Excluded 1 source as single-class\n",
      "Stats: 7 sources, 7 series, 6 platforms, 309 samples\n",
      "Loading data and calculating fold change for DOID_10763\n",
      "Loading data for GSE10767, id = 202\n",
      "640.46 ms in get_probes(4)\n",
      "  7.93 s in load_gse( series_id platform_id..., 202, False)\n",
      "  2.33 s in get_gene_fold_change(<Gse GSE10767>, False, 0, None)\n",
      "Loading data for GSE15197, id = 1359\n",
      "501.87 ms in get_probes(53)\n",
      " 14.78 s in load_gse( series_id platform_id..., 1359, False)\n",
      "  2.62 s in get_gene_fold_change(<Gse GSE15197>, False, 0, None)\n",
      "Loading data for GSE19617, id = 2473\n",
      "677.07 ms in get_probes(53)\n",
      " 12.51 s in load_gse( series_id platform_id..., 2473, False)\n",
      "  2.48 s in get_gene_fold_change(<Gse GSE19617>, False, 0, None)\n",
      "Loading data for GSE24988, id = 3871\n",
      "420.34 ms in get_probes(283)\n",
      " 32.75 s in load_gse( series_id platform_id..., 3871, False)\n",
      "  3.82 s in get_gene_fold_change(<Gse GSE24988>, False, 0, None)\n",
      "Loading data for GSE33463, id = 5944\n",
      "487.04 ms in get_probes(389)\n",
      " 60.72 s in load_gse( series_id platform_id..., 5944, False)\n",
      "  5.80 s in get_gene_fold_change(<Gse GSE33463>, False, 0, None)\n",
      "Loading data for GSE48149, id = 9192\n",
      "410.54 ms in get_probes(1292)\n",
      " 10.33 s in load_gse( series_id platform_id..., 9192, False)\n",
      "  1.77 s in get_gene_fold_change(<Gse GSE48149>, False, 0, None)\n",
      "Loading data for GSE703, id = 11135\n",
      "213.02 ms in get_probes(22)\n",
      "  1.86 s in load_gse( series_id platform_id..., 11135, False)\n",
      "710.23 ms in get_gene_fold_change(<Gse GSE703>, False, 0, None)\n",
      "163.00 s in Load/fold for DOID_10763\n",
      "Meta-Analyzing DOID_10763\n",
      "409.11 s in meta analysis of real data for DOID_10763\n",
      "551.80 ms in meta analysis of permutations for DOID_10763\n",
      "143.77 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "410.25 s in Meta analysis for DOID_10763\n",
      "DONE DOID_10763 analysis\n",
      "574.23 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10763 hypertension\n",
      "9"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_10871 analysis\n",
      "848.31 ms in get_analysis_df(\"AMD == 'AMD'\", \"AMD_control == 'AMD_c..., '')\n",
      "852.83 ms in Loading dataframe for DOID_10871\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "992.27 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:10871 age related macular degeneration\n",
      "10"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1094 analysis\n",
      "527.38 ms in get_analysis_df(\"ADHD == 'ADHD'\", \"ADHD_control == 'ADHD..., '')\n",
      "531.70 ms in Loading dataframe for DOID_1094\n",
      "Matching sources: 1\n",
      "Excluded 1 source by min samples\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "670.63 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1094 attention deficit hyperactivity disorder\n",
      "11"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_11054 analysis\n",
      "187.60 ms in get_analysis_df(\"bladder_cancer == 'bl..., \"bladder_cancer_contro..., '')\n",
      "192.53 ms in Loading dataframe for DOID_11054\n",
      "Matching sources: 0\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "257.00 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:11054 urinary bladder cancer\n",
      "12"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_11612 analysis\n",
      "659.71 ms in get_analysis_df(\"PCOS == 'PCOS'\", \"PCOS_control == 'PCOS..., '')\n",
      "663.94 ms in Loading dataframe for DOID_11612\n",
      "Matching sources: 11\n",
      "Stats: 11 sources, 10 series, 5 platforms, 215 samples\n",
      "Loading data and calculating fold change for DOID_11612\n",
      "Loading data for GSE10946, id = 254\n",
      "627.60 ms in get_probes(4)\n",
      " 18.10 s in load_gse( series_id platform_id..., 254, False)\n",
      "  2.58 s in get_gene_fold_change(<Gse GSE10946>, False, 0, None)\n",
      "Loading data for GSE1615, id = 1613\n",
      "394.39 ms in get_probes(2)\n",
      "328.87 ms in get_probes(50)\n",
      "  8.39 s in load_gse( series_id platform_id..., 1613, False)\n",
      "  2.51 s in get_gene_fold_change(<Gse GSE1615>, False, 0, None)\n",
      "Loading data for GSE34526, id = 6193\n",
      "633.63 ms in get_probes(4)\n",
      " 10.67 s in load_gse( series_id platform_id..., 6193, False)\n",
      "  2.53 s in get_gene_fold_change(<Gse GSE34526>, False, 0, None)\n",
      "Loading data for GSE43264, id = 8243\n",
      "352.05 ms in get_probes(1160)\n",
      "  4.34 s in load_gse( series_id platform_id..., 8243, False)\n",
      "  1.42 s in get_gene_fold_change(<Gse GSE43264>, False, 0, None)\n",
      "Loading data for GSE43322, id = 8252\n",
      "350.34 ms in get_probes(1160)\n",
      "  7.19 s in load_gse( series_id platform_id..., 8252, False)\n",
      "  1.71 s in get_gene_fold_change(<Gse GSE43322>, False, 0, None)\n",
      "Loading data for GSE48301, id = 9220\n",
      "404.42 ms in get_probes(283)\n",
      " 10.89 s in load_gse( series_id platform_id..., 9220, False)\n",
      "  2.17 s in get_gene_fold_change(<Gse GSE48301>, False, 0, None)\n",
      "Loading data for GSE5090, id = 9638\n",
      "386.80 ms in get_probes(2)\n",
      "  4.76 s in load_gse( series_id platform_id..., 9638, False)\n",
      "  1.54 s in get_gene_fold_change(<Gse GSE5090>, False, 0, None)\n",
      "Loading data for GSE5850, id = 10693\n",
      "620.85 ms in get_probes(4)\n",
      "  9.47 s in load_gse( series_id platform_id..., 10693, False)\n",
      "  2.61 s in get_gene_fold_change(<Gse GSE5850>, False, 0, None)\n",
      "Loading data for GSE6798, id = 11053\n",
      "622.97 ms in get_probes(4)\n",
      " 18.75 s in load_gse( series_id platform_id..., 11053, False)\n",
      "  3.63 s in get_gene_fold_change(<Gse GSE6798>, False, 0, None)\n",
      "Loading data for GSE8157, id = 11431\n",
      "630.11 ms in get_probes(4)\n",
      " 31.07 s in load_gse( series_id platform_id..., 11431, False)\n",
      "  2.61 s in get_gene_fold_change(<Gse GSE8157>, False, 0, None)\n",
      "150.63 s in Load/fold for DOID_11612\n",
      "Meta-Analyzing DOID_11612\n",
      "424.83 s in meta analysis of real data for DOID_11612\n",
      "927.93 ms in meta analysis of permutations for DOID_11612\n",
      "133.99 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "426.36 s in Meta analysis for DOID_11612\n",
      "DONE DOID_11612 analysis\n",
      "577.86 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:11612 polycystic ovary syndrome\n",
      "13"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_11714 analysis\n",
      "  1.16 s in get_analysis_df(\"GDM == 'GDM'\", \"GDM_control == 'GDM_c..., '')\n",
      "  1.17 s in Loading dataframe for DOID_11714\n",
      "Matching sources: 4\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 2 sources, 2 series, 2 platforms, 12 samples\n",
      "Loading data and calculating fold change for DOID_11714\n",
      "Loading data for GSE49524, id = 9415\n",
      "383.56 ms in get_probes(482)\n",
      "  3.80 s in load_gse( series_id platform_id..., 9415, False)\n",
      "  1.29 s in get_gene_fold_change(<Gse GSE49524>, False, 0, None)\n",
      "Loading data for GSE65737, id = 13510\n",
      " 39.08 ms in get_probes(1802)\n",
      "  7.65 s in load_gse( series_id platform_id..., 13510, False)\n",
      "259.91 ms in get_gene_fold_change(<Gse GSE65737>, False, 0, None)\n",
      " 13.24 s in Load/fold for DOID_11714\n",
      "Meta-Analyzing DOID_11714\n",
      "FAIL Got empty meta-analysis\n",
      " 24.41 s in meta analysis of real data for DOID_11714\n",
      " 24.41 s in Meta analysis for DOID_11714\n",
      " 38.99 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:11714 gestational diabetes\n",
      "14"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_11949 analysis\n",
      "683.39 ms in get_analysis_df(\"CJD == 'CJD'\", \"CJD_control == 'CJD_c..., '')\n",
      "688.06 ms in Loading dataframe for DOID_11949\n",
      "Matching sources: 1\n",
      "Excluded 1 source by min samples\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "829.53 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:11949 Creutzfeldt-Jakob disease\n",
      "15"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_12306 analysis\n",
      "528.20 ms in get_analysis_df(\"vitiligo == 'vitiligo'\", \"vitiligo_control == '..., '')\n",
      "532.34 ms in Loading dataframe for DOID_12306\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "665.96 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:12306 vitiligo\n",
      "16"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_12365 analysis\n",
      "772.40 ms in get_analysis_df(\"malaria == 'malaria'\", \"malaria_control == 'm..., '')\n",
      "776.55 ms in Loading dataframe for DOID_12365\n",
      "Matching sources: 8\n",
      "Excluded 1 source as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 6 sources, 6 series, 5 platforms, 295 samples\n",
      "Loading data and calculating fold change for DOID_12365\n",
      "Loading data for GSE15221, id = 1372\n",
      "472.48 ms in get_probes(17)\n",
      " 18.50 s in load_gse( series_id platform_id..., 1372, False)\n",
      "  2.54 s in get_gene_fold_change(<Gse GSE15221>, False, 0, None)\n",
      "Loading data for GSE18323, id = 2164\n",
      "504.85 ms in get_probes(9)\n",
      " 59.50 s in load_gse( series_id platform_id..., 2164, False)\n",
      "  2.99 s in get_gene_fold_change(<Gse GSE18323>, False, 0, None)\n",
      "Loading data for GSE24849, id = 3840\n",
      "665.61 ms in get_probes(4)\n",
      " 20.08 s in load_gse( series_id platform_id..., 3840, False)\n",
      "  3.15 s in get_gene_fold_change(<Gse GSE24849>, False, 0, None)\n",
      "Loading data for GSE34404, id = 6155\n",
      "622.84 ms in get_probes(674)\n",
      " 81.11 s in load_gse( series_id platform_id..., 6155, False)\n",
      "  9.39 s in get_gene_fold_change(<Gse GSE34404>, False, 0, None)\n",
      "Loading data for GSE5418, id = 10145\n",
      "387.07 ms in get_probes(2)\n",
      " 15.67 s in load_gse( series_id platform_id..., 10145, False)\n",
      "  2.23 s in get_gene_fold_change(<Gse GSE5418>, False, 0, None)\n",
      "Loading data for GSE7586, id = 11293\n",
      "630.14 ms in get_probes(4)\n",
      " 12.58 s in load_gse( series_id platform_id..., 11293, False)\n",
      "  2.65 s in get_gene_fold_change(<Gse GSE7586>, False, 0, None)\n",
      "232.71 s in Load/fold for DOID_12365\n",
      "Meta-Analyzing DOID_12365\n",
      "427.04 s in meta analysis of real data for DOID_12365\n",
      "541.35 ms in meta analysis of permutations for DOID_12365\n",
      "127.08 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "428.18 s in Meta analysis for DOID_12365\n",
      "DONE DOID_12365 analysis\n",
      "661.86 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:12365 malaria\n",
      "17"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_12849 analysis\n",
      "972.66 ms in get_analysis_df(\"autism == 'autism'\", \"autism_control == 'au..., '')\n",
      "976.91 ms in Loading dataframe for DOID_12849\n",
      "Matching sources: 14\n",
      "Excluded 1 source as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 12 sources, 11 series, 7 platforms, 1302 samples\n",
      "Loading data and calculating fold change for DOID_12849\n",
      "Loading data for GSE15402, id = 1425\n",
      "574.85 ms in get_probes(497)\n",
      " 43.99 s in load_gse( series_id platform_id..., 1425, False)\n",
      "  4.44 s in get_gene_fold_change(<Gse GSE15402>, False, 0, None)\n",
      "Loading data for GSE15451, id = 1434\n",
      "611.95 ms in get_probes(497)\n",
      " 14.35 s in load_gse( series_id platform_id..., 1434, False)\n",
      "  2.13 s in get_gene_fold_change(<Gse GSE15451>, False, 0, None)\n",
      "Loading data for GSE18123, id = 2111\n",
      "621.44 ms in get_probes(4)\n",
      "409.51 ms in get_probes(283)\n",
      "116.39 s in load_gse( series_id platform_id..., 2111, False)\n",
      " 10.72 s in get_gene_fold_change(<Gse GSE18123>, False, 0, None)\n",
      "Loading data for GSE25507, id = 4004\n",
      "697.71 ms in get_probes(4)\n",
      " 90.69 s in load_gse( series_id platform_id..., 4004, False)\n",
      " 10.06 s in get_gene_fold_change(<Gse GSE25507>, False, 0, None)\n",
      "Loading data for GSE26415, id = 4204\n",
      "500.18 ms in get_probes(53)\n",
      " 17.25 s in load_gse( series_id platform_id..., 4204, False)\n",
      "  4.76 s in get_gene_fold_change(<Gse GSE26415>, False, 0, None)\n",
      "Loading data for GSE28521, id = 4729\n",
      "424.22 ms in get_probes(331)\n",
      " 10.15 s in load_gse( series_id platform_id..., 4729, False)\n",
      "  3.25 s in get_gene_fold_change(<Gse GSE28521>, False, 0, None)\n",
      "Loading data for GSE37772, id = 6963\n",
      "433.29 ms in get_probes(331)\n",
      "111.35 s in load_gse( series_id platform_id..., 6963, False)\n",
      " 15.74 s in get_gene_fold_change(<Gse GSE37772>, False, 0, None)\n",
      "Loading data for GSE38322, id = 7080\n",
      "528.52 ms in get_probes(674)\n",
      " 21.71 s in load_gse( series_id platform_id..., 7080, False)\n",
      "  3.01 s in get_gene_fold_change(<Gse GSE38322>, False, 0, None)\n",
      "Loading data for GSE43076, id = 8190\n",
      "513.79 ms in get_probes(53)\n",
      "891.11 ms in load_gse( series_id platform_id..., 8190, False)\n",
      "/home/dhimmels/anaconda3/envs/stargeo/lib/python2.7/site-packages/numpy/lib/nanfunctions.py:227: RuntimeWarning: All-NaN axis encountered\n",
      "  warnings.warn(\"All-NaN axis encountered\", RuntimeWarning)\n",
      "  1.93 s in get_gene_fold_change(<Gse GSE43076>, False, 0, None)\n",
      "Loading data for GSE42133, id = 12084\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:12849 autistic disorder\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE42133/GSE42133_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "541.31 ms in get_probes(674)\n",
      " 86.31 s in load_gse( series_id platform_id..., 12084, False)\n",
      "  7.93 s in get_gene_fold_change(<Gse GSE42133>, False, 0, None)\n",
      "Loading data for GSE63524, id = 13274\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE42133/GSE42133_series_matrix.txt.gz\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE63524/GSE63524_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "776.78 ms in get_probes(10)\n",
      " 13.49 s in load_gse( series_id platform_id..., 13274, False)\n",
      "  2.07 s in get_gene_fold_change(<Gse GSE63524>, False, 0, None)\n",
      "596.60 s in Load/fold for DOID_12849\n",
      "Meta-Analyzing DOID_12849\n",
      "465.19 s in meta analysis of real data for DOID_12849\n",
      "  1.06 s in meta analysis of permutations for DOID_12849\n",
      "146.15 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "466.87 s in Meta analysis for DOID_12849\n",
      "DONE DOID_12849 analysis\n",
      "1064.68 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE63524/GSE63524_series_matrix.txt.gz\n",
      "18"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_13223 analysis\n",
      "876.80 ms in get_analysis_df(\"uterine_fibroid == 'u..., \"uterine_fibroid_contr..., '')\n",
      "880.97 ms in Loading dataframe for DOID_13223\n",
      "Matching sources: 7\n",
      "Excluded 1 source as single-class\n",
      "Stats: 6 sources, 6 series, 5 platforms, 124 samples\n",
      "Loading data and calculating fold change for DOID_13223\n",
      "Loading data for GSE2724, id = 4435\n",
      "396.20 ms in get_probes(2)\n",
      "  5.14 s in load_gse( series_id platform_id..., 4435, False)\n",
      "  1.69 s in get_gene_fold_change(<Gse GSE2724>, False, 0, None)\n",
      "Loading data for GSE28945, id = 4848\n",
      "113.37 ms in get_probes(929)\n",
      "689.04 ms in load_gse( series_id platform_id..., 4848, False)\n",
      "365.17 ms in get_gene_fold_change(<Gse GSE28945>, False, 0, None)\n",
      "Loading data for GSE41386, id = 7773\n",
      "640.53 ms in get_probes(4)\n",
      "  9.32 s in load_gse( series_id platform_id..., 7773, False)\n",
      "  2.45 s in get_gene_fold_change(<Gse GSE41386>, False, 0, None)\n",
      "Loading data for GSE593, id = 10753\n",
      "416.41 ms in get_probes(2)\n",
      "  3.94 s in load_gse( series_id platform_id..., 10753, False)\n",
      "  1.47 s in get_gene_fold_change(<Gse GSE593>, False, 0, None)\n",
      "Loading data for GSE9511, id = 11757\n",
      "219.17 ms in get_probes(22)\n",
      "  2.37 s in load_gse( series_id platform_id..., 11757, False)\n",
      "693.31 ms in get_gene_fold_change(<Gse GSE9511>, False, 0, None)\n",
      "Loading data for GSE64763, id = 13408\n",
      "392.57 ms in get_probes(9)\n",
      " 14.72 s in load_gse( series_id platform_id..., 13408, False)\n",
      "  2.56 s in get_gene_fold_change(<Gse GSE64763>, False, 0, None)\n",
      " 47.45 s in Load/fold for DOID_13223\n",
      "Meta-Analyzing DOID_13223\n",
      "271.18 s in meta analysis of real data for DOID_13223\n",
      "368.96 ms in meta analysis of permutations for DOID_13223\n",
      "135.90 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "272.14 s in Meta analysis for DOID_13223\n",
      "DONE DOID_13223 analysis\n",
      "320.66 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:13223 uterine fibroid\n",
      "19"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1324 analysis\n",
      "  1.58 s in get_analysis_df(\"NSCLC == 'NSCLC' or P..., \"lung_cancer_control =..., '')\n",
      "  1.59 s in Loading dataframe for DOID_1324\n",
      "Matching sources: 51\n",
      "Excluded 49 sources as single-class\n",
      "Stats: 2 sources, 2 series, 2 platforms, 800 samples\n",
      "Loading data and calculating fold change for DOID_1324\n",
      "Loading data for GSE19804, id = 2533\n",
      "647.04 ms in get_probes(4)\n",
      " 64.35 s in load_gse( series_id platform_id..., 2533, False)\n",
      "  4.89 s in get_gene_fold_change(<Gse GSE19804>, False, 0, None)\n",
      "Loading data for GSE66499, id = 13592\n",
      "662.28 ms in get_probes(283)\n",
      "245.86 s in load_gse( series_id platform_id..., 13592, False)\n",
      " 21.82 s in get_gene_fold_change(<Gse GSE66499>, False, 0, None)\n",
      "337.69 s in Load/fold for DOID_1324\n",
      "Meta-Analyzing DOID_1324\n",
      "310.46 s in meta analysis of real data for DOID_1324\n",
      "225.98 ms in meta analysis of permutations for DOID_1324\n",
      "149.97 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "311.37 s in Meta analysis for DOID_1324\n",
      "DONE DOID_1324 analysis\n",
      "650.85 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1324 lung cancer\n",
      "20"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_13241 analysis\n",
      "692.33 ms in get_analysis_df(\"Behcet == 'Behcet'\", \"Behcet_control == 'Be..., '')\n",
      "696.77 ms in Loading dataframe for DOID_13241\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "836.11 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:13241 Behcet's disease\n",
      "21"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_13378 analysis\n",
      "534.16 ms in get_analysis_df(\"Kawasaki == 'Kawasaki'\", \"Kawasaki_control == '..., '')\n",
      "538.32 ms in Loading dataframe for DOID_13378\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "670.39 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:13378 Kawasaki disease\n",
      "22"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_14221 analysis\n",
      "664.23 ms in get_analysis_df(\"MetS == 'MetS'\", \"MetS_Control == 'MetS..., '')\n",
      "668.46 ms in Loading dataframe for DOID_14221\n",
      "Matching sources: 4\n",
      "Excluded 4 sources as single-class\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "748.79 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:14221 metabolic syndrome X\n",
      "23"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_14227 analysis\n",
      "520.80 ms in get_analysis_df(\"azoospermia == 'azoos..., \"azoospermia_control =..., '')\n",
      "524.97 ms in Loading dataframe for DOID_14227\n",
      "Matching sources: 2\n",
      "Stats: 2 sources, 2 series, 1 platforms, 51 samples\n",
      "Loading data and calculating fold change for DOID_14227\n",
      "Loading data for GSE45885, id = 8763\n",
      "418.51 ms in get_probes(283)\n",
      " 12.55 s in load_gse( series_id platform_id..., 8763, False)\n",
      "  2.25 s in get_gene_fold_change(<Gse GSE45885>, False, 0, None)\n",
      "Loading data for GSE45887, id = 8764\n",
      "416.45 ms in get_probes(283)\n",
      "  9.17 s in load_gse( series_id platform_id..., 8764, False)\n",
      "  1.89 s in get_gene_fold_change(<Gse GSE45887>, False, 0, None)\n",
      " 26.43 s in Load/fold for DOID_14227\n",
      "Meta-Analyzing DOID_14227\n",
      "345.29 s in meta analysis of real data for DOID_14227\n",
      "164.47 ms in meta analysis of permutations for DOID_14227\n",
      "137.09 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "345.97 s in Meta analysis for DOID_14227\n",
      "DONE DOID_14227 analysis\n",
      "373.09 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:14227 azoospermia\n",
      "24"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_14330 analysis\n",
      "821.05 ms in get_analysis_df(\"PD == 'PD'\", \"PD_control == 'PD_con..., '')\n",
      "825.38 ms in Loading dataframe for DOID_14330\n",
      "Matching sources: 30\n",
      "Excluded 2 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 27 sources, 26 series, 12 platforms, 946 samples\n",
      "Loading data and calculating fold change for DOID_14330\n",
      "Loading data for GSE18838, id = 2292\n",
      "550.63 ms in get_probes(280)\n",
      "  7.34 s in load_gse( series_id platform_id..., 2292, False)\n",
      "  2.70 s in get_gene_fold_change(<Gse GSE18838>, False, 0, None)\n",
      "Loading data for GSE19587, id = 2467\n",
      "393.92 ms in get_probes(9)\n",
      "  6.29 s in load_gse( series_id platform_id..., 2467, False)\n",
      "759.14 ms in get_gene_fold_change(<Gse GSE19587>, False, 0, None)\n",
      "Loading data for GSE20141, id = 2616\n",
      "696.28 ms in get_probes(4)\n",
      " 13.39 s in load_gse( series_id platform_id..., 2616, False)\n",
      "  3.04 s in get_gene_fold_change(<Gse GSE20141>, False, 0, None)\n",
      "Loading data for GSE20146, id = 2619\n",
      "685.16 ms in get_probes(4)\n",
      " 12.73 s in load_gse( series_id platform_id..., 2619, False)\n",
      "  3.13 s in get_gene_fold_change(<Gse GSE20146>, False, 0, None)\n",
      "Loading data for GSE20153, id = 2621\n",
      "626.99 ms in get_probes(4)\n",
      " 12.07 s in load_gse( series_id platform_id..., 2621, False)\n",
      "  2.83 s in get_gene_fold_change(<Gse GSE20153>, False, 0, None)\n",
      "Loading data for GSE20163, id = 2625\n",
      "392.26 ms in get_probes(2)\n",
      "  6.31 s in load_gse( series_id platform_id..., 2625, False)\n",
      "  1.64 s in get_gene_fold_change(<Gse GSE20163>, False, 0, None)\n",
      "Loading data for GSE20164, id = 2626\n",
      "391.40 ms in get_probes(2)\n",
      "  4.65 s in load_gse( series_id platform_id..., 2626, False)\n",
      "  1.39 s in get_gene_fold_change(<Gse GSE20164>, False, 0, None)\n",
      "Loading data for GSE20168, id = 2628\n",
      "389.58 ms in get_probes(2)\n",
      "  7.83 s in load_gse( series_id platform_id..., 2628, False)\n",
      "  1.84 s in get_gene_fold_change(<Gse GSE20168>, False, 0, None)\n",
      "Loading data for GSE20186, id = 2635\n",
      "404.24 ms in get_probes(2)\n",
      " 10.81 s in load_gse( series_id platform_id..., 2635, False)\n",
      "  1.95 s in get_gene_fold_change(<Gse GSE20186>, False, 0, None)\n",
      "Loading data for GSE20291, id = 2660\n",
      "392.91 ms in get_probes(2)\n",
      "  8.94 s in load_gse( series_id platform_id..., 2660, False)\n",
      "  2.11 s in get_gene_fold_change(<Gse GSE20291>, False, 0, None)\n",
      "Loading data for GSE20292, id = 2661\n",
      "394.65 ms in get_probes(2)\n",
      "  7.81 s in load_gse( series_id platform_id..., 2661, False)\n",
      "  1.95 s in get_gene_fold_change(<Gse GSE20292>, False, 0, None)\n",
      "Loading data for GSE20295, id = 2663\n",
      "396.72 ms in get_probes(2)\n",
      " 21.52 s in load_gse( series_id platform_id..., 2663, False)\n",
      "  3.01 s in get_gene_fold_change(<Gse GSE20295>, False, 0, None)\n",
      "Loading data for GSE20314, id = 2668\n",
      "391.59 ms in get_probes(2)\n",
      "  4.05 s in load_gse( series_id platform_id..., 2668, False)\n",
      "  1.33 s in get_gene_fold_change(<Gse GSE20314>, False, 0, None)\n",
      "Loading data for GSE20333, id = 2674\n",
      "265.56 ms in get_probes(80)\n",
      "  1.85 s in load_gse( series_id platform_id..., 2674, False)\n",
      "802.23 ms in get_gene_fold_change(<Gse GSE20333>, False, 0, None)\n",
      "Loading data for GSE22491, id = 3215\n",
      "630.85 ms in get_probes(53)\n",
      " 11.52 s in load_gse( series_id platform_id..., 3215, False)\n",
      "442.88 ms in get_gene_fold_change(<Gse GSE22491>, False, 0, None)\n",
      "Loading data for GSE23290, id = 3414\n",
      "544.57 ms in get_probes(280)\n",
      "  4.67 s in load_gse( series_id platform_id..., 3414, False)\n",
      "  2.12 s in get_gene_fold_change(<Gse GSE23290>, False, 0, None)\n",
      "Loading data for GSE24378, id = 3706\n",
      "712.86 ms in get_probes(67)\n",
      " 16.62 s in load_gse( series_id platform_id..., 3706, False)\n",
      "  3.06 s in get_gene_fold_change(<Gse GSE24378>, False, 0, None)\n",
      "Loading data for GSE28894, id = 4829\n",
      "391.75 ms in get_probes(3)\n",
      " 26.56 s in load_gse( series_id platform_id..., 4829, False)\n",
      "  4.50 s in get_gene_fold_change(<Gse GSE28894>, False, 0, None)\n",
      "Loading data for GSE34287, id = 6132\n",
      " 18.10 s in get_probes(563)\n",
      "1064.22 s in load_gse( series_id platform_id..., 6132, False)\n",
      "124.06 s in get_gene_fold_change(<Gse GSE34287>, False, 0, None)\n",
      "Loading data for GSE34516, id = 6187\n",
      "549.74 ms in get_probes(280)\n",
      "  3.88 s in load_gse( series_id platform_id..., 6187, False)\n",
      "  3.69 s in get_gene_fold_change(<Gse GSE34516>, False, 0, None)\n",
      "Loading data for GSE6613, id = 11004\n",
      "398.99 ms in get_probes(2)\n",
      " 19.66 s in load_gse( series_id platform_id..., 11004, False)\n",
      "  3.14 s in get_gene_fold_change(<Gse GSE6613>, False, 0, None)\n",
      "Loading data for GSE7621, id = 11300\n",
      "638.21 ms in get_probes(4)\n",
      " 15.20 s in load_gse( series_id platform_id..., 11300, False)\n",
      "  3.42 s in get_gene_fold_change(<Gse GSE7621>, False, 0, None)\n",
      "Loading data for GSE8397, id = 11469\n",
      "391.71 ms in get_probes(2)\n",
      "344.13 ms in get_probes(50)\n",
      " 26.22 s in load_gse( series_id platform_id..., 11469, False)\n",
      "  4.15 s in get_gene_fold_change(<Gse GSE8397>, False, 0, None)\n",
      "Loading data for GSE43490, id = 12100\n",
      "506.59 ms in get_probes(53)\n",
      " 10.85 s in load_gse( series_id platform_id..., 12100, False)\n",
      "  2.85 s in get_gene_fold_change(<Gse GSE43490>, False, 0, None)\n",
      "Loading data for GSE54282, id = 12418\n",
      "384.50 ms in get_probes(1367)\n",
      "  4.69 s in load_gse( series_id platform_id..., 12418, False)\n",
      "  1.29 s in get_gene_fold_change(<Gse GSE54282>, False, 0, None)\n",
      "Loading data for GSE57475, id = 12634\n",
      "496.94 ms in get_probes(389)\n",
      " 64.82 s in load_gse( series_id platform_id..., 12634, False)\n",
      "  7.32 s in get_gene_fold_change(<Gse GSE57475>, False, 0, None)\n",
      "1596.87 s in Load/fold for DOID_14330\n",
      "Meta-Analyzing DOID_14330\n",
      "469.09 s in meta analysis of real data for DOID_14330\n",
      "  6.42 s in meta analysis of permutations for DOID_14330\n",
      "146.15 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "476.15 s in Meta analysis for DOID_14330\n",
      "DONE DOID_14330 analysis\n",
      "2074.15 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:14330 Parkinson's disease\n",
      "25"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1595 analysis\n",
      "  2.30 s in get_analysis_df(\"Depression == 'Depres..., \"MDD_control == 'MDD_c..., '')\n",
      "  2.30 s in Loading dataframe for DOID_1595\n",
      "Matching sources: 19\n",
      "Excluded 5 sources as single-class\n",
      "Stats: 14 sources, 14 series, 6 platforms, 533 samples\n",
      "Loading data and calculating fold change for DOID_1595\n",
      "Loading data for GSE12654, id = 704\n",
      "301.68 ms in get_probes(7)\n",
      "  8.12 s in load_gse( series_id platform_id..., 704, False)\n",
      "  1.20 s in get_gene_fold_change(<Gse GSE12654>, False, 0, None)\n",
      "Loading data for GSE19738, id = 2518\n",
      "729.91 ms in get_probes(282)\n",
      " 40.29 s in load_gse( series_id platform_id..., 2518, False)\n",
      "  7.71 s in get_gene_fold_change(<Gse GSE19738>, False, 0, None)\n",
      "Loading data for GSE39653, id = 7363\n",
      "770.22 ms in get_probes(674)\n",
      " 28.74 s in load_gse( series_id platform_id..., 7363, False)\n",
      "  3.49 s in get_gene_fold_change(<Gse GSE39653>, False, 0, None)\n",
      "Loading data for GSE54562, id = 10202\n",
      "493.64 ms in get_probes(389)\n",
      " 14.14 s in load_gse( series_id platform_id..., 10202, False)\n",
      "  1.75 s in get_gene_fold_change(<Gse GSE54562>, False, 0, None)\n",
      "Loading data for GSE54563, id = 10203\n",
      "504.69 ms in get_probes(389)\n",
      " 31.29 s in load_gse( series_id platform_id..., 10203, False)\n",
      "  3.42 s in get_gene_fold_change(<Gse GSE54563>, False, 0, None)\n",
      "Loading data for GSE54564, id = 10204\n",
      "508.15 ms in get_probes(389)\n",
      " 24.86 s in load_gse( series_id platform_id..., 10204, False)\n",
      "  2.92 s in get_gene_fold_change(<Gse GSE54564>, False, 0, None)\n",
      "Loading data for GSE54565, id = 10205\n",
      "633.66 ms in get_probes(4)\n",
      " 27.51 s in load_gse( series_id platform_id..., 10205, False)\n",
      "  3.53 s in get_gene_fold_change(<Gse GSE54565>, False, 0, None)\n",
      "Loading data for GSE54566, id = 10206\n",
      "637.70 ms in get_probes(4)\n",
      " 24.99 s in load_gse( series_id platform_id..., 10206, False)\n",
      "  3.33 s in get_gene_fold_change(<Gse GSE54566>, False, 0, None)\n",
      "Loading data for GSE54567, id = 10207\n",
      "629.40 ms in get_probes(4)\n",
      " 20.99 s in load_gse( series_id platform_id..., 10207, False)\n",
      "  3.54 s in get_gene_fold_change(<Gse GSE54567>, False, 0, None)\n",
      "Loading data for GSE54568, id = 10208\n",
      "627.24 ms in get_probes(4)\n",
      " 21.87 s in load_gse( series_id platform_id..., 10208, False)\n",
      "  3.72 s in get_gene_fold_change(<Gse GSE54568>, False, 0, None)\n",
      "Loading data for GSE54570, id = 10210\n",
      "394.17 ms in get_probes(2)\n",
      "  6.07 s in load_gse( series_id platform_id..., 10210, False)\n",
      "  1.89 s in get_gene_fold_change(<Gse GSE54570>, False, 0, None)\n",
      "Loading data for GSE54571, id = 10211\n",
      "628.97 ms in get_probes(4)\n",
      " 20.05 s in load_gse( series_id platform_id..., 10211, False)\n",
      "  3.47 s in get_gene_fold_change(<Gse GSE54571>, False, 0, None)\n",
      "Loading data for GSE54572, id = 10212\n",
      "625.43 ms in get_probes(4)\n",
      " 18.49 s in load_gse( series_id platform_id..., 10212, False)\n",
      "  3.26 s in get_gene_fold_change(<Gse GSE54572>, False, 0, None)\n",
      "Loading data for GSE54575, id = 10213\n",
      "393.65 ms in get_probes(2)\n",
      "  5.83 s in load_gse( series_id platform_id..., 10213, False)\n",
      "  1.75 s in get_gene_fold_change(<Gse GSE54575>, False, 0, None)\n",
      "344.13 s in Load/fold for DOID_1595\n",
      "Meta-Analyzing DOID_1595\n",
      "450.85 s in meta analysis of real data for DOID_1595\n",
      "  1.59 s in meta analysis of permutations for DOID_1595\n",
      "133.99 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "453.05 s in Meta analysis for DOID_1595\n",
      "DONE DOID_1595 analysis\n",
      "799.72 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1595 endogenous depression\n",
      "26"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1612 analysis\n",
      "  1.78 s in get_analysis_df(\"breast_cancer == 'bre..., \"breast_cancer_control..., '')\n",
      "  1.78 s in Loading dataframe for DOID_1612\n",
      "Matching sources: 63\n",
      "Excluded 33 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 29 sources, 25 series, 16 platforms, 1819 samples\n",
      "Loading data and calculating fold change for DOID_1612\n",
      "Loading data for GSE10780, id = 206\n",
      "643.49 ms in get_probes(4)\n",
      "118.98 s in load_gse( series_id platform_id..., 206, False)\n",
      " 13.50 s in get_gene_fold_change(<Gse GSE10780>, False, 0, None)\n",
      "Loading data for GSE10797, id = 212\n",
      "397.68 ms in get_probes(9)\n",
      " 21.71 s in load_gse( series_id platform_id..., 212, False)\n",
      "  2.98 s in get_gene_fold_change(<Gse GSE10797>, False, 0, None)\n",
      "Loading data for GSE10810, id = 218\n",
      "643.77 ms in get_probes(4)\n",
      " 16.22 s in load_gse( series_id platform_id..., 218, False)\n",
      "  4.79 s in get_gene_fold_change(<Gse GSE10810>, False, 0, None)\n",
      "Loading data for GSE10885, id = 238\n",
      "370.63 ms in get_probes(83)\n",
      "370.30 ms in get_probes(49)\n",
      " 40.35 s in load_gse( series_id platform_id..., 238, False)\n",
      "  6.74 s in get_gene_fold_change(<Gse GSE10885>, False, 0, None)\n",
      "Loading data for GSE10886, id = 239\n",
      "378.77 ms in get_probes(83)\n",
      " 36.45 s in load_gse( series_id platform_id..., 239, False)\n",
      "  3.98 s in get_gene_fold_change(<Gse GSE10886>, False, 0, None)\n",
      "Loading data for GSE11545, id = 412\n",
      "365.76 ms in get_probes(60)\n",
      " 25.41 s in load_gse( series_id platform_id..., 412, False)\n",
      "  1.84 s in get_gene_fold_change(<Gse GSE11545>, False, 0, None)\n",
      "Loading data for GSE13293, id = 864\n",
      "115.03 ms in get_probes(399)\n",
      "118.23 ms in get_probes(401)\n",
      " 22.48 s in load_gse( series_id platform_id..., 864, False)\n",
      "872.85 ms in get_gene_fold_change(<Gse GSE13293>, False, 0, None)\n",
      "Loading data for GSE14548, id = 1177\n",
      "704.84 ms in get_probes(67)\n",
      " 50.12 s in load_gse( series_id platform_id..., 1177, False)\n",
      "  6.45 s in get_gene_fold_change(<Gse GSE14548>, False, 0, None)\n",
      "Loading data for GSE15852, id = 1538\n",
      "394.83 ms in get_probes(2)\n",
      " 18.36 s in load_gse( series_id platform_id..., 1538, False)\n",
      "  3.63 s in get_gene_fold_change(<Gse GSE15852>, False, 0, None)\n",
      "Loading data for GSE20266, id = 2653\n",
      "625.49 ms in get_probes(4)\n",
      " 12.33 s in load_gse( series_id platform_id..., 2653, False)\n",
      "  3.01 s in get_gene_fold_change(<Gse GSE20266>, False, 0, None)\n",
      "Loading data for GSE20437, id = 2693\n",
      "393.14 ms in get_probes(2)\n",
      "  8.86 s in load_gse( series_id platform_id..., 2693, False)\n",
      "  2.32 s in get_gene_fold_change(<Gse GSE20437>, False, 0, None)\n",
      "Loading data for GSE21947, id = 3053\n",
      "391.14 ms in get_probes(2)\n",
      "  6.94 s in load_gse( series_id platform_id..., 3053, False)\n",
      "  1.60 s in get_gene_fold_change(<Gse GSE21947>, False, 0, None)\n",
      "Loading data for GSE22384, id = 3185\n",
      "  1.94 s in get_probes(517)\n",
      "  1.56 s in get_probes(519)\n",
      "  2.03 s in get_probes(520)\n",
      "284.82 s in load_gse( series_id platform_id..., 3185, False)\n",
      " 39.56 s in get_gene_fold_change(<Gse GSE22384>, False, 0, None)\n",
      "Loading data for GSE26910, id = 4354\n",
      "634.81 ms in get_probes(4)\n",
      " 15.90 s in load_gse( series_id platform_id..., 4354, False)\n",
      "  2.57 s in get_gene_fold_change(<Gse GSE26910>, False, 0, None)\n",
      "Loading data for GSE27120, id = 4400\n",
      "630.03 ms in get_probes(4)\n",
      " 52.33 s in load_gse( series_id platform_id..., 4400, False)\n",
      "  3.75 s in get_gene_fold_change(<Gse GSE27120>, False, 0, None)\n",
      "Loading data for GSE29044, id = 4880\n",
      "627.92 ms in get_probes(4)\n",
      " 63.95 s in load_gse( series_id platform_id..., 4880, False)\n",
      "  8.85 s in get_gene_fold_change(<Gse GSE29044>, False, 0, None)\n",
      "Loading data for GSE29431, id = 4975\n",
      "627.35 ms in get_probes(4)\n",
      " 32.62 s in load_gse( series_id platform_id..., 4975, False)\n",
      "  5.90 s in get_gene_fold_change(<Gse GSE29431>, False, 0, None)\n",
      "Loading data for GSE32641, id = 5764\n",
      "368.45 ms in get_probes(49)\n",
      " 26.35 s in load_gse( series_id platform_id..., 5764, False)\n",
      "  3.91 s in get_gene_fold_change(<Gse GSE32641>, False, 0, None)\n",
      "Loading data for GSE33447, id = 5940\n",
      "704.63 ms in get_probes(1010)\n",
      "  9.58 s in load_gse( series_id platform_id..., 5940, False)\n",
      "  2.20 s in get_gene_fold_change(<Gse GSE33447>, False, 0, None)\n",
      "Loading data for GSE36295, id = 6622\n",
      "414.92 ms in get_probes(283)\n",
      " 17.57 s in load_gse( series_id platform_id..., 6622, False)\n",
      "  2.35 s in get_gene_fold_change(<Gse GSE36295>, False, 0, None)\n",
      "Loading data for GSE38959, id = 7206\n",
      "708.55 ms in get_probes(10)\n",
      " 22.11 s in load_gse( series_id platform_id..., 7206, False)\n",
      "  3.49 s in get_gene_fold_change(<Gse GSE38959>, False, 0, None)\n",
      "Loading data for GSE42568, id = 8064\n",
      "626.59 ms in get_probes(4)\n",
      " 70.99 s in load_gse( series_id platform_id..., 8064, False)\n",
      "  8.84 s in get_gene_fold_change(<Gse GSE42568>, False, 0, None)\n",
      "Loading data for GSE50567, id = 9572\n",
      "644.37 ms in get_probes(4)\n",
      " 27.73 s in load_gse( series_id platform_id..., 9572, False)\n",
      "  3.64 s in get_gene_fold_change(<Gse GSE50567>, False, 0, None)\n",
      "Loading data for GSE57297, id = 10562\n",
      "543.38 ms in get_probes(1339)\n",
      " 20.45 s in load_gse( series_id platform_id..., 10562, False)\n",
      "  3.09 s in get_gene_fold_change(<Gse GSE57297>, False, 0, None)\n",
      "Loading data for GSE6130, id = 10873\n",
      "364.99 ms in get_probes(49)\n",
      " 10.84 s in load_gse( series_id platform_id..., 10873, False)\n",
      "  2.31 s in get_gene_fold_change(<Gse GSE6130>, False, 0, None)\n",
      "1187.38 s in Load/fold for DOID_1612\n",
      "Meta-Analyzing DOID_1612\n",
      "492.34 s in meta analysis of real data for DOID_1612\n",
      "  3.72 s in meta analysis of permutations for DOID_1612\n",
      "134.94 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "496.68 s in Meta analysis for DOID_1612\n",
      "DONE DOID_1612 analysis\n",
      "1686.18 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1612 breast cancer\n",
      "27"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1686 analysis\n",
      "  1.70 s in get_analysis_df(\"glaucoma == 'glaucoma'\", \"glaucoma_control == '..., '')\n",
      "  1.70 s in Loading dataframe for DOID_1686\n",
      "Matching sources: 11\n",
      "Excluded 1 source as single-class\n",
      "Excluded 3 sources by min samples\n",
      "Stats: 7 sources, 6 series, 5 platforms, 138 samples\n",
      "Loading data and calculating fold change for DOID_1686\n",
      "Loading data for GSE2378, id = 3554\n",
      "309.04 ms in get_probes(7)\n",
      "  3.09 s in load_gse( series_id platform_id..., 3554, False)\n",
      "748.82 ms in get_gene_fold_change(<Gse GSE2378>, False, 0, None)\n",
      "Loading data for GSE27276, id = 4448\n",
      "404.38 ms in get_probes(39)\n",
      " 22.35 s in load_gse( series_id platform_id..., 4448, False)\n",
      "  2.07 s in get_gene_fold_change(<Gse GSE27276>, False, 0, None)\n",
      "Loading data for GSE45570, id = 8697\n",
      "544.98 ms in get_probes(280)\n",
      "  5.84 s in load_gse( series_id platform_id..., 8697, False)\n",
      "  2.06 s in get_gene_fold_change(<Gse GSE45570>, False, 0, None)\n",
      "Loading data for GSE9944, id = 11879\n",
      "394.91 ms in get_probes(9)\n",
      "472.41 ms in get_probes(7)\n",
      " 12.78 s in load_gse( series_id platform_id..., 11879, False)\n",
      "  3.18 s in get_gene_fold_change(<Gse GSE9944>, False, 0, None)\n",
      "Loading data for GSE27057, id = 11946\n",
      " 38.89 ms in get_probes(1703)\n",
      "977.82 ms in load_gse( series_id platform_id..., 11946, False)\n",
      "192.35 ms in get_gene_fold_change(<Gse GSE27057>, False, 0, None)\n",
      "Loading data for GSE27058, id = 11947\n",
      " 39.14 ms in get_probes(1703)\n",
      "899.34 ms in load_gse( series_id platform_id..., 11947, False)\n",
      "175.76 ms in get_gene_fold_change(<Gse GSE27058>, False, 0, None)\n",
      " 56.01 s in Load/fold for DOID_1686\n",
      "Meta-Analyzing DOID_1686\n",
      "336.07 s in meta analysis of real data for DOID_1686\n",
      "319.10 ms in meta analysis of permutations for DOID_1686\n",
      "135.90 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "336.99 s in Meta analysis for DOID_1686\n",
      "DONE DOID_1686 analysis\n",
      "394.90 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1686 glaucoma\n",
      "28"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1793 analysis\n",
      "893.86 ms in get_analysis_df(\"pancreatic_cancer == ..., \"pancreatic_cancer_con..., '')\n",
      "898.07 ms in Loading dataframe for DOID_1793\n",
      "Matching sources: 28\n",
      "Excluded 16 sources as single-class\n",
      "Excluded 3 sources by min samples\n",
      "Stats: 9 sources, 9 series, 5 platforms, 250 samples\n",
      "Loading data and calculating fold change for DOID_1793\n",
      "Loading data for GSE14245, id = 1080\n",
      "637.77 ms in get_probes(4)\n",
      " 13.65 s in load_gse( series_id platform_id..., 1080, False)\n",
      "  2.49 s in get_gene_fold_change(<Gse GSE14245>, False, 0, None)\n",
      "Loading data for GSE15932, id = 1550\n",
      "640.27 ms in get_probes(4)\n",
      " 20.37 s in load_gse( series_id platform_id..., 1550, False)\n",
      "  3.43 s in get_gene_fold_change(<Gse GSE15932>, False, 0, None)\n",
      "Loading data for GSE19279, id = 2400\n",
      "404.20 ms in get_probes(2)\n",
      "  5.50 s in load_gse( series_id platform_id..., 2400, False)\n",
      "  1.15 s in get_gene_fold_change(<Gse GSE19279>, False, 0, None)\n",
      "Loading data for GSE19650, id = 2485\n",
      "647.77 ms in get_probes(4)\n",
      " 14.47 s in load_gse( series_id platform_id..., 2485, False)\n",
      "  3.32 s in get_gene_fold_change(<Gse GSE19650>, False, 0, None)\n",
      "Loading data for GSE21163, id = 2867\n",
      "  4.63 s in get_probes(54)\n",
      " 70.25 s in load_gse( series_id platform_id..., 2867, False)\n",
      " 24.09 s in get_gene_fold_change(<Gse GSE21163>, False, 0, None)\n",
      "Loading data for GSE22780, id = 3283\n",
      "626.75 ms in get_probes(4)\n",
      " 12.48 s in load_gse( series_id platform_id..., 3283, False)\n",
      "  2.87 s in get_gene_fold_change(<Gse GSE22780>, False, 0, None)\n",
      "Loading data for GSE23397, id = 3450\n",
      "  4.69 s in get_probes(54)\n",
      " 84.41 s in load_gse( series_id platform_id..., 3450, False)\n",
      " 24.03 s in get_gene_fold_change(<Gse GSE23397>, False, 0, None)\n",
      "Loading data for GSE28735, id = 4791\n",
      "445.42 ms in get_probes(283)\n",
      " 25.83 s in load_gse( series_id platform_id..., 4791, False)\n",
      "  4.24 s in get_gene_fold_change(<Gse GSE28735>, False, 0, None)\n",
      "Loading data for GSE30134, id = 5154\n",
      "149.89 ms in get_probes(963)\n",
      "  1.56 s in load_gse( series_id platform_id..., 5154, False)\n",
      "433.51 ms in get_gene_fold_change(<Gse GSE30134>, False, 0, None)\n",
      "320.62 s in Load/fold for DOID_1793\n",
      "Meta-Analyzing DOID_1793\n",
      "440.56 s in meta analysis of real data for DOID_1793\n",
      "  3.26 s in meta analysis of permutations for DOID_1793\n",
      "137.09 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "444.43 s in Meta analysis for DOID_1793\n",
      "DONE DOID_1793 analysis\n",
      "766.17 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1793 pancreatic cancer\n",
      "29"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1909 analysis\n",
      "  1.87 s in get_analysis_df(\"melanoma == 'melanoma'\", \"melanoma_control == '..., '')\n",
      "  1.87 s in Loading dataframe for DOID_1909\n",
      "Matching sources: 48\n",
      "Excluded 35 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 12 sources, 9 series, 5 platforms, 487 samples\n",
      "Loading data and calculating fold change for DOID_1909\n",
      "Loading data for GSE11907, id = 488\n",
      "401.26 ms in get_probes(2)\n",
      "350.03 ms in get_probes(50)\n",
      "101.16 s in load_gse( series_id platform_id..., 488, False)\n",
      "  4.24 s in get_gene_fold_change(<Gse GSE11907>, False, 0, None)\n",
      "Loading data for GSE15605, id = 1479\n",
      "843.89 ms in get_probes(4)\n",
      " 40.85 s in load_gse( series_id platform_id..., 1479, False)\n",
      "  3.87 s in get_gene_fold_change(<Gse GSE15605>, False, 0, None)\n",
      "Loading data for GSE3189, id = 5563\n",
      "400.24 ms in get_probes(2)\n",
      " 13.98 s in load_gse( series_id platform_id..., 5563, False)\n",
      "  2.74 s in get_gene_fold_change(<Gse GSE3189>, False, 0, None)\n",
      "Loading data for GSE44660, id = 8515\n",
      "545.60 ms in get_probes(280)\n",
      "  6.38 s in load_gse( series_id platform_id..., 8515, False)\n",
      "  2.51 s in get_gene_fold_change(<Gse GSE44660>, False, 0, None)\n",
      "Loading data for GSE46517, id = 8884\n",
      "397.11 ms in get_probes(2)\n",
      " 32.56 s in load_gse( series_id platform_id..., 8884, False)\n",
      "  4.01 s in get_gene_fold_change(<Gse GSE46517>, False, 0, None)\n",
      "Loading data for GSE4840, id = 9237\n",
      "415.91 ms in get_probes(2)\n",
      "426.68 ms in get_probes(50)\n",
      "  9.22 s in load_gse( series_id platform_id..., 9237, False)\n",
      "  2.54 s in get_gene_fold_change(<Gse GSE4840>, False, 0, None)\n",
      "Loading data for GSE4845, id = 9251\n",
      "393.28 ms in get_probes(2)\n",
      "436.85 ms in get_probes(50)\n",
      " 15.27 s in load_gse( series_id platform_id..., 9251, False)\n",
      "  3.12 s in get_gene_fold_change(<Gse GSE4845>, False, 0, None)\n",
      "Loading data for GSE7469, id = 11250\n",
      "712.27 ms in get_probes(26)\n",
      " 12.43 s in load_gse( series_id platform_id..., 11250, False)\n",
      "  2.49 s in get_gene_fold_change(<Gse GSE7469>, False, 0, None)\n",
      "Loading data for GSE7553, id = 11277\n",
      "622.82 ms in get_probes(4)\n",
      " 48.66 s in load_gse( series_id platform_id..., 11277, False)\n",
      "  5.80 s in get_gene_fold_change(<Gse GSE7553>, False, 0, None)\n",
      "314.85 s in Load/fold for DOID_1909\n",
      "Meta-Analyzing DOID_1909\n",
      "417.25 s in meta analysis of real data for DOID_1909\n",
      "  1.05 s in meta analysis of permutations for DOID_1909\n",
      "134.94 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "418.92 s in Meta analysis for DOID_1909\n",
      "DONE DOID_1909 analysis\n",
      "735.87 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1909 melanoma\n",
      "30"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_1936 analysis\n",
      "  1.12 s in get_analysis_df(\"atherosclerosis == 'a..., \"atherosclerosis_contr..., '')\n",
      "  1.13 s in Loading dataframe for DOID_1936\n",
      "Matching sources: 6\n",
      "Excluded 1 source as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 4 sources, 4 series, 4 platforms, 346 samples\n",
      "Loading data and calculating fold change for DOID_1936\n",
      "Loading data for GSE20129, id = 2612\n",
      "385.46 ms in get_probes(3)\n",
      " 30.05 s in load_gse( series_id platform_id..., 2612, False)\n",
      "  4.61 s in get_gene_fold_change(<Gse GSE20129>, False, 0, None)\n",
      "Loading data for GSE23746, id = 3545\n",
      "375.64 ms in get_probes(74)\n",
      " 15.65 s in load_gse( series_id platform_id..., 3545, False)\n",
      "  2.66 s in get_gene_fold_change(<Gse GSE23746>, False, 0, None)\n",
      "Loading data for GSE37356, id = 6873\n",
      "517.42 ms in get_probes(674)\n",
      " 29.25 s in load_gse( series_id platform_id..., 6873, False)\n",
      "  4.64 s in get_gene_fold_change(<Gse GSE37356>, False, 0, None)\n",
      "Loading data for GSE9874, id = 11861\n",
      "389.88 ms in get_probes(2)\n",
      " 13.91 s in load_gse( series_id platform_id..., 11861, False)\n",
      "  2.91 s in get_gene_fold_change(<Gse GSE9874>, False, 0, None)\n",
      "104.86 s in Load/fold for DOID_1936\n",
      "Meta-Analyzing DOID_1936\n",
      "367.74 s in meta analysis of real data for DOID_1936\n",
      "306.02 ms in meta analysis of permutations for DOID_1936\n",
      "136.14 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "368.65 s in Meta analysis for DOID_1936\n",
      "DONE DOID_1936 analysis\n",
      "474.82 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:1936 atherosclerosis\n",
      "31"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_219 analysis\n",
      "791.29 ms in get_analysis_df(\"colon_cancer == 'colo..., \"colon_cancer_control ..., '')\n",
      "795.60 ms in Loading dataframe for DOID_219\n",
      "Matching sources: 5\n",
      "Excluded 1 source as single-class\n",
      "Stats: 4 sources, 3 series, 4 platforms, 275 samples\n",
      "Loading data and calculating fold change for DOID_219\n",
      "Loading data for GSE36400, id = 6646\n",
      "542.89 ms in get_probes(280)\n",
      "  5.46 s in load_gse( series_id platform_id..., 6646, False)\n",
      "  1.56 s in get_gene_fold_change(<Gse GSE36400>, False, 0, None)\n",
      "Loading data for GSE7466, id = 11249\n",
      " 75.17 ms in get_probes(821)\n",
      " 74.89 ms in get_probes(823)\n",
      " 13.50 s in load_gse( series_id platform_id..., 11249, False)\n",
      "552.06 ms in get_gene_fold_change(<Gse GSE7466>, False, 0, None)\n",
      "Loading data for GSE68468, id = 13736\n",
      "390.12 ms in get_probes(2)\n",
      " 83.88 s in load_gse( series_id platform_id..., 13736, False)\n",
      "  8.33 s in get_gene_fold_change(<Gse GSE68468>, False, 0, None)\n",
      "114.04 s in Load/fold for DOID_219\n",
      "Meta-Analyzing DOID_219\n",
      "220.42 s in meta analysis of real data for DOID_219\n",
      "191.45 ms in meta analysis of permutations for DOID_219\n",
      "135.90 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "221.19 s in Meta analysis for DOID_219\n",
      "DONE DOID_219 analysis\n",
      "336.20 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:219 colon cancer\n",
      "32"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2377 analysis\n",
      "960.37 ms in get_analysis_df(\"MS == 'MS'\", \"MS_control == 'MS_con..., '')\n",
      "964.60 ms in Loading dataframe for DOID_2377\n",
      "Matching sources: 27\n",
      "Excluded 3 sources as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 22 sources, 21 series, 9 platforms, 1781 samples\n",
      "Loading data and calculating fold change for DOID_2377\n",
      "Loading data for GSE10064, id = 17\n",
      "412.18 ms in get_probes(12)\n",
      " 10.82 s in load_gse( series_id platform_id..., 17, False)\n",
      "  1.67 s in get_gene_fold_change(<Gse GSE10064>, False, 0, None)\n",
      "Loading data for GSE13732, id = 973\n",
      "633.60 ms in get_probes(4)\n",
      " 73.07 s in load_gse( series_id platform_id..., 973, False)\n",
      "  8.85 s in get_gene_fold_change(<Gse GSE13732>, False, 0, None)\n",
      "Loading data for GSE14895, id = 1280\n",
      "388.18 ms in get_probes(9)\n",
      "394.69 ms in get_probes(2)\n",
      " 15.78 s in load_gse( series_id platform_id..., 1280, False)\n",
      "  3.24 s in get_gene_fold_change(<Gse GSE14895>, False, 0, None)\n",
      "Loading data for GSE16461, id = 1688\n",
      "633.89 ms in get_probes(4)\n",
      " 12.62 s in load_gse( series_id platform_id..., 1688, False)\n",
      "  2.80 s in get_gene_fold_change(<Gse GSE16461>, False, 0, None)\n",
      "Loading data for GSE17048, id = 1837\n",
      "686.11 ms in get_probes(389)\n",
      " 56.78 s in load_gse( series_id platform_id..., 1837, False)\n",
      "  6.34 s in get_gene_fold_change(<Gse GSE17048>, False, 0, None)\n",
      "Loading data for GSE17393, id = 1917\n",
      "387.54 ms in get_probes(9)\n",
      "  5.45 s in load_gse( series_id platform_id..., 1917, False)\n",
      "  1.57 s in get_gene_fold_change(<Gse GSE17393>, False, 0, None)\n",
      "Loading data for GSE17449, id = 1929\n",
      "387.68 ms in get_probes(9)\n",
      "  8.37 s in load_gse( series_id platform_id..., 1929, False)\n",
      "  1.87 s in get_gene_fold_change(<Gse GSE17449>, False, 0, None)\n",
      "Loading data for GSE21942, id = 3050\n",
      "623.83 ms in get_probes(4)\n",
      " 15.67 s in load_gse( series_id platform_id..., 3050, False)\n",
      "  3.52 s in get_gene_fold_change(<Gse GSE21942>, False, 0, None)\n",
      "Loading data for GSE23832, id = 3564\n",
      "408.93 ms in get_probes(283)\n",
      "  4.66 s in load_gse( series_id platform_id..., 3564, False)\n",
      "  1.59 s in get_gene_fold_change(<Gse GSE23832>, False, 0, None)\n",
      "Loading data for GSE26484, id = 4227\n",
      "620.18 ms in get_probes(4)\n",
      "  9.96 s in load_gse( series_id platform_id..., 4227, False)\n",
      "  2.50 s in get_gene_fold_change(<Gse GSE26484>, False, 0, None)\n",
      "Loading data for GSE27688, id = 4537\n",
      "638.91 ms in get_probes(53)\n",
      " 12.57 s in load_gse( series_id platform_id..., 4537, False)\n",
      "  2.75 s in get_gene_fold_change(<Gse GSE27688>, False, 0, None)\n",
      "Loading data for GSE32645, id = 5766\n",
      "682.50 ms in get_probes(10)\n",
      " 10.10 s in load_gse( series_id platform_id..., 5766, False)\n",
      "  1.82 s in get_gene_fold_change(<Gse GSE32645>, False, 0, None)\n",
      "Loading data for GSE32915, id = 5810\n",
      "652.66 ms in get_probes(10)\n",
      " 11.46 s in load_gse( series_id platform_id..., 5810, False)\n",
      "  2.09 s in get_gene_fold_change(<Gse GSE32915>, False, 0, None)\n",
      "Loading data for GSE32988, id = 5831\n",
      "659.84 ms in get_probes(53)\n",
      " 24.66 s in load_gse( series_id platform_id..., 5831, False)\n",
      "  3.46 s in get_gene_fold_change(<Gse GSE32988>, False, 0, None)\n",
      "Loading data for GSE41848, id = 7884\n",
      " 39.78 ms in get_probes(1289)\n",
      " 44.96 s in load_gse( series_id platform_id..., 7884, False)\n",
      "307.71 ms in get_gene_fold_change(<Gse GSE41848>, False, 0, None)\n",
      "Loading data for GSE41849, id = 7885\n",
      " 39.34 ms in get_probes(1289)\n",
      " 20.77 s in load_gse( series_id platform_id..., 7885, False)\n",
      "231.72 ms in get_gene_fold_change(<Gse GSE41849>, False, 0, None)\n",
      "Loading data for GSE41850, id = 7887\n",
      " 39.17 ms in get_probes(1289)\n",
      "160.56 s in load_gse( series_id platform_id..., 7887, False)\n",
      "400.87 ms in get_gene_fold_change(<Gse GSE41850>, False, 0, None)\n",
      "Loading data for GSE41890, id = 7897\n",
      "414.89 ms in get_probes(283)\n",
      " 24.10 s in load_gse( series_id platform_id..., 7897, False)\n",
      "  3.31 s in get_gene_fold_change(<Gse GSE41890>, False, 0, None)\n",
      "Loading data for GSE43591, id = 8314\n",
      "619.29 ms in get_probes(4)\n",
      " 15.75 s in load_gse( series_id platform_id..., 8314, False)\n",
      "  3.02 s in get_gene_fold_change(<Gse GSE43591>, False, 0, None)\n",
      "Loading data for GSE37750, id = 12030\n",
      "619.96 ms in get_probes(4)\n",
      " 18.00 s in load_gse( series_id platform_id..., 12030, False)\n",
      "  3.28 s in get_gene_fold_change(<Gse GSE37750>, False, 0, None)\n",
      "Loading data for GSE59085, id = 12788\n",
      "620.90 ms in get_probes(4)\n",
      " 16.50 s in load_gse( series_id platform_id..., 12788, False)\n",
      "  3.22 s in get_gene_fold_change(<Gse GSE59085>, False, 0, None)\n",
      "637.76 s in Load/fold for DOID_2377\n",
      "Meta-Analyzing DOID_2377\n",
      "471.19 s in meta analysis of real data for DOID_2377\n",
      "  1.95 s in meta analysis of permutations for DOID_2377\n",
      "129.94 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "473.76 s in Meta analysis for DOID_2377\n",
      "DONE DOID_2377 analysis\n",
      "1112.79 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2377 multiple sclerosis\n",
      "33"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2394 analysis\n",
      "  1.07 s in get_analysis_df(\"ovarian_cancer == 'ov..., \"ovarian_cancer_contro..., '')\n",
      "  1.08 s in Loading dataframe for DOID_2394\n",
      "Matching sources: 4\n",
      "Excluded 1 source as single-class\n",
      "Stats: 3 sources, 3 series, 2 platforms, 123 samples\n",
      "Loading data and calculating fold change for DOID_2394\n",
      "Loading data for GSE29220, id = 4918\n",
      "634.25 ms in get_probes(4)\n",
      " 16.86 s in load_gse( series_id platform_id..., 4918, False)\n",
      "  3.24 s in get_gene_fold_change(<Gse GSE29220>, False, 0, None)\n",
      "Loading data for GSE31682, id = 5516\n",
      "350.25 ms in get_probes(60)\n",
      " 18.72 s in load_gse( series_id platform_id..., 5516, False)\n",
      "  2.62 s in get_gene_fold_change(<Gse GSE31682>, False, 0, None)\n",
      "Loading data for GSE38666, id = 7137\n",
      "624.42 ms in get_probes(4)\n",
      " 25.57 s in load_gse( series_id platform_id..., 7137, False)\n",
      "  3.87 s in get_gene_fold_change(<Gse GSE38666>, False, 0, None)\n",
      " 72.05 s in Load/fold for DOID_2394\n",
      "Meta-Analyzing DOID_2394\n",
      "393.79 s in meta analysis of real data for DOID_2394\n",
      "335.69 ms in meta analysis of permutations for DOID_2394\n",
      "128.03 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "394.72 s in Meta analysis for DOID_2394\n",
      "DONE DOID_2394 analysis\n",
      "468.02 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2394 ovarian cancer\n",
      "34"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2531 analysis\n",
      "  1.64 s in get_analysis_df(\"AML_Tissue == 'AML_Ti..., \"AML_Control == 'AML_C..., '')\n",
      "  1.64 s in Loading dataframe for DOID_2531\n",
      "Matching sources: 95\n",
      "Excluded 82 sources as single-class\n",
      "Stats: 13 sources, 13 series, 5 platforms, 755 samples\n",
      "Loading data and calculating fold change for DOID_2531\n",
      "Loading data for GSE10746, id = 198\n",
      "636.98 ms in get_probes(4)\n",
      "  9.82 s in load_gse( series_id platform_id..., 198, False)\n",
      "  2.61 s in get_gene_fold_change(<Gse GSE10746>, False, 0, None)\n",
      "Loading data for GSE13591, id = 938\n",
      "401.84 ms in get_probes(2)\n",
      " 40.19 s in load_gse( series_id platform_id..., 938, False)\n",
      "  4.67 s in get_gene_fold_change(<Gse GSE13591>, False, 0, None)\n",
      "Loading data for GSE17054, id = 1838\n",
      "639.44 ms in get_probes(4)\n",
      " 14.18 s in load_gse( series_id platform_id..., 1838, False)\n",
      "  2.69 s in get_gene_fold_change(<Gse GSE17054>, False, 0, None)\n",
      "Loading data for GSE24870, id = 3848\n",
      "408.95 ms in get_probes(9)\n",
      " 10.12 s in load_gse( series_id platform_id..., 3848, False)\n",
      "  2.44 s in get_gene_fold_change(<Gse GSE24870>, False, 0, None)\n",
      "Loading data for GSE27838, id = 4550\n",
      "626.86 ms in get_probes(4)\n",
      " 17.50 s in load_gse( series_id platform_id..., 4550, False)\n",
      "  3.77 s in get_gene_fold_change(<Gse GSE27838>, False, 0, None)\n",
      "Loading data for GSE36474, id = 6658\n",
      "623.81 ms in get_probes(4)\n",
      "  8.55 s in load_gse( series_id platform_id..., 6658, False)\n",
      "  1.84 s in get_gene_fold_change(<Gse GSE36474>, False, 0, None)\n",
      "Loading data for GSE39754, id = 7392\n",
      "544.41 ms in get_probes(280)\n",
      " 38.87 s in load_gse( series_id platform_id..., 7392, False)\n",
      "  9.43 s in get_gene_fold_change(<Gse GSE39754>, False, 0, None)\n",
      "Loading data for GSE43176, id = 8218\n",
      "411.94 ms in get_probes(2)\n",
      " 20.50 s in load_gse( series_id platform_id..., 8218, False)\n",
      "  3.06 s in get_gene_fold_change(<Gse GSE43176>, False, 0, None)\n",
      "Loading data for GSE5900, id = 10734\n",
      "643.24 ms in get_probes(4)\n",
      " 41.88 s in load_gse( series_id platform_id..., 10734, False)\n",
      "  4.05 s in get_gene_fold_change(<Gse GSE5900>, False, 0, None)\n",
      "Loading data for GSE6477, id = 10950\n",
      "402.80 ms in get_probes(2)\n",
      " 30.19 s in load_gse( series_id platform_id..., 10950, False)\n",
      "  5.53 s in get_gene_fold_change(<Gse GSE6477>, False, 0, None)\n",
      "Loading data for GSE6691, id = 11013\n",
      "392.90 ms in get_probes(2)\n",
      " 13.11 s in load_gse( series_id platform_id..., 11013, False)\n",
      "  1.60 s in get_gene_fold_change(<Gse GSE6691>, False, 0, None)\n",
      "Loading data for GSE7116, id = 11154\n",
      "626.38 ms in get_probes(4)\n",
      " 16.30 s in load_gse( series_id platform_id..., 11154, False)\n",
      "  3.44 s in get_gene_fold_change(<Gse GSE7116>, False, 0, None)\n",
      "Loading data for GSE983, id = 11844\n",
      "218.45 ms in get_probes(22)\n",
      "  1.87 s in load_gse( series_id platform_id..., 11844, False)\n",
      "663.65 ms in get_gene_fold_change(<Gse GSE983>, False, 0, None)\n",
      "314.45 s in Load/fold for DOID_2531\n",
      "Meta-Analyzing DOID_2531\n",
      "405.78 s in meta analysis of real data for DOID_2531\n",
      "  1.33 s in meta analysis of permutations for DOID_2531\n",
      "133.99 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "407.71 s in Meta analysis for DOID_2531\n",
      "DONE DOID_2531 analysis\n",
      "724.11 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2531 hematologic cancer\n",
      "35"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_263 analysis\n",
      "  1.22 s in get_analysis_df(\"RCC == 'RCC'\", \"RCC_Control == 'RCC_C..., '')\n",
      "  1.22 s in Loading dataframe for DOID_263\n",
      "Matching sources: 60\n",
      "Excluded 37 sources as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 21 sources, 17 series, 13 platforms, 1536 samples\n",
      "Loading data and calculating fold change for DOID_263\n",
      "Loading data for GSE12606, id = 685\n",
      "625.26 ms in get_probes(4)\n",
      "  9.55 s in load_gse( series_id platform_id..., 685, False)\n",
      "  2.57 s in get_gene_fold_change(<Gse GSE12606>, False, 0, None)\n",
      "Loading data for GSE14762, id = 1230\n",
      " 40.30 ms in get_probes(471)\n",
      "  4.45 s in load_gse( series_id platform_id..., 1230, False)\n",
      "320.08 ms in get_gene_fold_change(<Gse GSE14762>, False, 0, None)\n",
      "Loading data for GSE15641, id = 1490\n",
      "391.32 ms in get_probes(2)\n",
      " 18.86 s in load_gse( series_id platform_id..., 1490, False)\n",
      "  3.17 s in get_gene_fold_change(<Gse GSE15641>, False, 0, None)\n",
      "Loading data for GSE17816, id = 2030\n",
      "333.72 ms in get_probes(588)\n",
      " 10.10 s in load_gse( series_id platform_id..., 2030, False)\n",
      "  2.02 s in get_gene_fold_change(<Gse GSE17816>, False, 0, None)\n",
      "Loading data for GSE17818, id = 2031\n",
      "347.50 ms in get_probes(588)\n",
      " 24.94 s in load_gse( series_id platform_id..., 2031, False)\n",
      "  3.47 s in get_gene_fold_change(<Gse GSE17818>, False, 0, None)\n",
      "Loading data for GSE17895, id = 2051\n",
      "344.39 ms in get_probes(588)\n",
      " 32.86 s in load_gse( series_id platform_id..., 2051, False)\n",
      "  4.56 s in get_gene_fold_change(<Gse GSE17895>, False, 0, None)\n",
      "Loading data for GSE26574, id = 4253\n",
      "364.97 ms in get_probes(875)\n",
      " 18.31 s in load_gse( series_id platform_id..., 4253, False)\n",
      "  1.54 s in get_gene_fold_change(<Gse GSE26574>, False, 0, None)\n",
      "Loading data for GSE3, id = 5117\n",
      "602.69 ms in get_probes(258)\n",
      "570.71 ms in get_probes(259)\n",
      "209.46 s in load_gse( series_id platform_id..., 5117, False)\n",
      " 12.90 s in get_gene_fold_change(<Gse GSE3>, False, 0, None)\n",
      "Loading data for GSE36895, id = 6744\n",
      "637.64 ms in get_probes(4)\n",
      " 51.41 s in load_gse( series_id platform_id..., 6744, False)\n",
      "  5.08 s in get_gene_fold_change(<Gse GSE36895>, False, 0, None)\n",
      "Loading data for GSE40435, id = 7557\n",
      "534.00 ms in get_probes(674)\n",
      "109.20 s in load_gse( series_id platform_id..., 7557, False)\n",
      "  9.90 s in get_gene_fold_change(<Gse GSE40435>, False, 0, None)\n",
      "Loading data for GSE46699, id = 8919\n",
      "627.50 ms in get_probes(4)\n",
      " 81.27 s in load_gse( series_id platform_id..., 8919, False)\n",
      " 10.05 s in get_gene_fold_change(<Gse GSE46699>, False, 0, None)\n",
      "Loading data for GSE47032, id = 8982\n",
      "541.08 ms in get_probes(280)\n",
      "  4.84 s in get_probes(54)\n",
      " 70.78 s in load_gse( series_id platform_id..., 8982, False)\n",
      " 25.03 s in get_gene_fold_change(<Gse GSE47032>, False, 0, None)\n",
      "Loading data for GSE53000, id = 9972\n",
      "424.36 ms in get_probes(283)\n",
      " 26.09 s in load_gse( series_id platform_id..., 9972, False)\n",
      "  3.17 s in get_gene_fold_change(<Gse GSE53000>, False, 0, None)\n",
      "Loading data for GSE53757, id = 10076\n",
      "634.42 ms in get_probes(4)\n",
      " 81.12 s in load_gse( series_id platform_id..., 10076, False)\n",
      " 11.13 s in get_gene_fold_change(<Gse GSE53757>, False, 0, None)\n",
      "Loading data for GSE6344, id = 10912\n",
      "392.80 ms in get_probes(2)\n",
      "334.30 ms in get_probes(50)\n",
      " 11.07 s in load_gse( series_id platform_id..., 10912, False)\n",
      "  2.79 s in get_gene_fold_change(<Gse GSE6344>, False, 0, None)\n",
      "Loading data for GSE7367, id = 11222\n",
      "154.50 ms in get_probes(963)\n",
      "  2.98 s in load_gse( series_id platform_id..., 11222, False)\n",
      "575.03 ms in get_gene_fold_change(<Gse GSE7367>, False, 0, None)\n",
      "Loading data for GSE781, id = 11344\n",
      "417.10 ms in get_probes(2)\n",
      "352.93 ms in get_probes(50)\n",
      " 10.61 s in load_gse( series_id platform_id..., 11344, False)\n",
      "  2.31 s in get_gene_fold_change(<Gse GSE781>, False, 0, None)\n",
      "881.23 s in Load/fold for DOID_263\n",
      "Meta-Analyzing DOID_263\n",
      "456.84 s in meta analysis of real data for DOID_263\n",
      "  2.83 s in meta analysis of permutations for DOID_263\n",
      "140.19 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "460.28 s in Meta analysis for DOID_263\n",
      "DONE DOID_263 analysis\n",
      "1343.04 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:263 kidney cancer\n",
      "36"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2841 analysis\n",
      "  1.49 s in get_analysis_df(\"asthma == 'asthma'\", \"asthma_control == 'as..., '')\n",
      "  1.50 s in Loading dataframe for DOID_2841\n",
      "Matching sources: 14\n",
      "Stats: 14 sources, 13 series, 9 platforms, 1486 samples\n",
      "Loading data and calculating fold change for DOID_2841\n",
      "Loading data for GSE19187, id = 2377\n",
      "416.18 ms in get_probes(283)\n",
      " 14.56 s in load_gse( series_id platform_id..., 2377, False)\n",
      "  2.04 s in get_gene_fold_change(<Gse GSE19187>, False, 0, None)\n",
      "Loading data for GSE27011, id = 4384\n",
      "438.88 ms in get_probes(283)\n",
      " 22.72 s in load_gse( series_id platform_id..., 4384, False)\n",
      "  2.95 s in get_gene_fold_change(<Gse GSE27011>, False, 0, None)\n",
      "Loading data for GSE27876, id = 4561\n",
      "693.51 ms in get_probes(53)\n",
      " 10.67 s in load_gse( series_id platform_id..., 4561, False)\n",
      "  2.19 s in get_gene_fold_change(<Gse GSE27876>, False, 0, None)\n",
      "Loading data for GSE4302, id = 8180\n",
      "628.39 ms in get_probes(4)\n",
      " 75.85 s in load_gse( series_id platform_id..., 8180, False)\n",
      "  8.29 s in get_gene_fold_change(<Gse GSE4302>, False, 0, None)\n",
      "Loading data for GSE44037, id = 8399\n",
      "897.74 ms in get_probes(901)\n",
      " 20.98 s in load_gse( series_id platform_id..., 8399, False)\n",
      "  3.21 s in get_gene_fold_change(<Gse GSE44037>, False, 0, None)\n",
      "Loading data for GSE46171, id = 8818\n",
      "725.52 ms in get_probes(1363)\n",
      "688.35 ms in get_probes(53)\n",
      " 42.90 s in load_gse( series_id platform_id..., 8818, False)\n",
      "  6.18 s in get_gene_fold_change(<Gse GSE46171>, False, 0, None)\n",
      "Loading data for GSE5272, id = 9938\n",
      "735.95 ms in get_probes(26)\n",
      "129.40 s in load_gse( series_id platform_id..., 9938, False)\n",
      "  9.59 s in get_gene_fold_change(<Gse GSE5272>, False, 0, None)\n",
      "Loading data for GSE54605, id = 10215\n",
      " 42.46 ms in get_probes(1454)\n",
      "337.32 ms in load_gse( series_id platform_id..., 10215, False)\n",
      "327.41 ms in get_gene_fold_change(<Gse GSE54605>, False, 0, None)\n",
      "Loading data for GSE56396, id = 10453\n",
      "412.76 ms in get_probes(283)\n",
      " 29.16 s in load_gse( series_id platform_id..., 10453, False)\n",
      "  4.82 s in get_gene_fold_change(<Gse GSE56396>, False, 0, None)\n",
      "Loading data for GSE8052, id = 11413\n",
      "642.58 ms in get_probes(4)\n",
      "180.37 s in load_gse( series_id platform_id..., 11413, False)\n",
      " 27.32 s in get_gene_fold_change(<Gse GSE8052>, False, 0, None)\n",
      "Loading data for GSE8190, id = 11437\n",
      "768.50 ms in get_probes(26)\n",
      "135.63 s in load_gse( series_id platform_id..., 11437, False)\n",
      "  8.79 s in get_gene_fold_change(<Gse GSE8190>, False, 0, None)\n",
      "Loading data for GSE40732, id = 12071\n",
      "773.59 ms in get_probes(1269)\n",
      " 80.98 s in load_gse( series_id platform_id..., 12071, False)\n",
      " 12.38 s in get_gene_fold_change(<Gse GSE40732>, False, 0, None)\n",
      "Loading data for GSE67472, id = 13661\n",
      " 39.90 ms in get_probes(1369)\n",
      " 22.81 s in load_gse( series_id platform_id..., 13661, False)\n",
      "310.30 ms in get_gene_fold_change(<Gse GSE67472>, False, 0, None)\n",
      "859.46 s in Load/fold for DOID_2841\n",
      "Meta-Analyzing DOID_2841\n",
      "467.77 s in meta analysis of real data for DOID_2841\n",
      "  1.24 s in meta analysis of permutations for DOID_2841\n",
      "134.94 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "469.63 s in Meta analysis for DOID_2841\n",
      "DONE DOID_2841 analysis\n",
      "1330.83 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2841 asthma\n",
      "37"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2986 analysis\n",
      "  1.06 s in get_analysis_df(\"IgA_nephropathy == 'I..., \"IgA_nephropathy_contr..., '')\n",
      "  1.06 s in Loading dataframe for DOID_2986\n",
      "Matching sources: 6\n",
      "Stats: 6 sources, 5 series, 3 platforms, 161 samples\n",
      "Loading data and calculating fold change for DOID_2986\n",
      "Loading data for GSE14795, id = 1241\n",
      "400.31 ms in get_probes(2)\n",
      "  6.06 s in load_gse( series_id platform_id..., 1241, False)\n",
      "  1.70 s in get_gene_fold_change(<Gse GSE14795>, False, 0, None)\n",
      "Loading data for GSE35487, id = 6431\n",
      "391.72 ms in get_probes(2)\n",
      "  9.15 s in load_gse( series_id platform_id..., 6431, False)\n",
      "  1.97 s in get_gene_fold_change(<Gse GSE35487>, False, 0, None)\n",
      "Loading data for GSE35488, id = 6432\n",
      "284.37 ms in get_probes(1019)\n",
      "  5.52 s in load_gse( series_id platform_id..., 6432, False)\n",
      "  1.27 s in get_gene_fold_change(<Gse GSE35488>, False, 0, None)\n",
      "Loading data for GSE35489, id = 6433\n",
      "294.34 ms in get_probes(1019)\n",
      "575.04 ms in get_probes(2)\n",
      " 14.90 s in load_gse( series_id platform_id..., 6433, False)\n",
      "  2.08 s in get_gene_fold_change(<Gse GSE35489>, False, 0, None)\n",
      "Loading data for GSE58539, id = 12726\n",
      "530.63 ms in get_probes(674)\n",
      " 12.73 s in load_gse( series_id platform_id..., 12726, False)\n",
      "  2.36 s in get_gene_fold_change(<Gse GSE58539>, False, 0, None)\n",
      " 59.49 s in Load/fold for DOID_2986\n",
      "Meta-Analyzing DOID_2986\n",
      "272.07 s in meta analysis of real data for DOID_2986\n",
      "367.14 ms in meta analysis of permutations for DOID_2986\n",
      "135.18 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "273.03 s in Meta analysis for DOID_2986\n",
      "DONE DOID_2986 analysis\n",
      "333.76 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2986 IgA glomerulonephritis\n",
      "38"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_2998 analysis\n",
      "860.02 ms in get_analysis_df(\"testicular_cancer == ..., \"testicular_cancer_con..., '')\n",
      "864.55 ms in Loading dataframe for DOID_2998\n",
      "Matching sources: 0\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "929.62 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:2998 testicular cancer\n",
      "39"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_3083 analysis\n",
      "882.74 ms in get_analysis_df(\"COPD == 'COPD'\", \"COPD_control == 'COPD..., '')\n",
      "887.22 ms in Loading dataframe for DOID_3083\n",
      "Matching sources: 22\n",
      "Excluded 4 sources as single-class\n",
      "Stats: 18 sources, 17 series, 7 platforms, 1720 samples\n",
      "Loading data and calculating fold change for DOID_3083\n",
      "Loading data for GSE10006, id = 4\n",
      "629.08 ms in get_probes(4)\n",
      " 48.65 s in load_gse( series_id platform_id..., 4, False)\n",
      "  7.68 s in get_gene_fold_change(<Gse GSE10006>, False, 0, None)\n",
      "Loading data for GSE11784, id = 450\n",
      "630.11 ms in get_probes(4)\n",
      " 86.30 s in load_gse( series_id platform_id..., 450, False)\n",
      " 11.75 s in get_gene_fold_change(<Gse GSE11784>, False, 0, None)\n",
      "Loading data for GSE12472, id = 652\n",
      "487.48 ms in get_probes(26)\n",
      "  9.32 s in load_gse( series_id platform_id..., 652, False)\n",
      "  3.72 s in get_gene_fold_change(<Gse GSE12472>, False, 0, None)\n",
      "Loading data for GSE16972, id = 1810\n",
      "415.70 ms in get_probes(2)\n",
      "  4.47 s in load_gse( series_id platform_id..., 1810, False)\n",
      "  1.48 s in get_gene_fold_change(<Gse GSE16972>, False, 0, None)\n",
      "Loading data for GSE19407, id = 2430\n",
      "640.41 ms in get_probes(4)\n",
      " 70.22 s in load_gse( series_id platform_id..., 2430, False)\n",
      " 10.60 s in get_gene_fold_change(<Gse GSE19407>, False, 0, None)\n",
      "Loading data for GSE20257, id = 2650\n",
      "632.61 ms in get_probes(4)\n",
      " 73.93 s in load_gse( series_id platform_id..., 2650, False)\n",
      " 10.54 s in get_gene_fold_change(<Gse GSE20257>, False, 0, None)\n",
      "Loading data for GSE27536, id = 4511\n",
      "628.66 ms in get_probes(4)\n",
      " 37.61 s in load_gse( series_id platform_id..., 4511, False)\n",
      "  5.30 s in get_gene_fold_change(<Gse GSE27536>, False, 0, None)\n",
      "Loading data for GSE27597, id = 4518\n",
      "541.85 ms in get_probes(280)\n",
      " 15.73 s in load_gse( series_id platform_id..., 4518, False)\n",
      "  3.49 s in get_gene_fold_change(<Gse GSE27597>, False, 0, None)\n",
      "Loading data for GSE29133, id = 4897\n",
      "660.30 ms in get_probes(4)\n",
      "  6.74 s in load_gse( series_id platform_id..., 4897, False)\n",
      "  2.33 s in get_gene_fold_change(<Gse GSE29133>, False, 0, None)\n",
      "Loading data for GSE30063, id = 5140\n",
      "629.79 ms in get_probes(4)\n",
      " 54.94 s in load_gse( series_id platform_id..., 5140, False)\n",
      "skipping GPL570: sample ids mismatch\n",
      "193.39 ms in get_gene_fold_change(<Gse GSE30063>, False, 0, None)\n",
      "Loading data for GSE37768, id = 6962\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:3083 chronic obstructive pulmonary disease\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE37768/GSE37768_series_matrix.txt.gz ...\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE37768/GSE37768-GPL570_series_matrix.txt.gz ...\n",
      "Failed loading matrix for serie 6962, platform 4"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "631.09 ms in get_probes(4)\n",
      "  2.21 s in load_gse( series_id platform_id..., 6962, False)\n",
      "skipping GPL570: sample ids mismatch\n",
      "154.20 ms in get_gene_fold_change(<Gse GSE37768>, False, 0, None)\n",
      "Loading data for GSE47460, id = 9050\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE47460/GSE47460_series_matrix.txt.gz ...\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE47460/GSE47460-GPL14550_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "522.57 ms in get_probes(1010)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE47460/GSE47460-GPL14550_series_matrix.txt.gz\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE47460/GSE47460_series_matrix.txt.gz ...\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE47460/GSE47460-GPL6480_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "508.03 ms in get_probes(53)\n",
      " 97.00 s in load_gse( series_id platform_id..., 9050, False)\n",
      " 21.30 s in get_gene_fold_change(<Gse GSE47460>, False, 0, None)\n",
      "Loading data for GSE5058, id = 9577\n",
      "653.07 ms in get_probes(4)\n",
      " 21.41 s in load_gse( series_id platform_id..., 9577, False)\n",
      "  4.34 s in get_gene_fold_change(<Gse GSE5058>, False, 0, None)\n",
      "Loading data for GSE54837, id = 10256\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE47460/GSE47460-GPL6480_series_matrix.txt.gz\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE54837/GSE54837_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "642.78 ms in get_probes(4)\n",
      "144.53 s in load_gse( series_id platform_id..., 10256, False)\n",
      " 15.93 s in get_gene_fold_change(<Gse GSE54837>, False, 0, None)\n",
      "Loading data for GSE8545, id = 11509\n",
      "639.79 ms in get_probes(4)\n",
      " 30.96 s in load_gse( series_id platform_id..., 11509, False)\n",
      "  4.14 s in get_gene_fold_change(<Gse GSE8545>, False, 0, None)\n",
      "Loading data for GSE8581, id = 11514\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE54837/GSE54837_series_matrix.txt.gz\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE8581/GSE8581_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "640.51 ms in get_probes(4)\n",
      " 38.96 s in load_gse( series_id platform_id..., 11514, False)\n",
      "  4.06 s in get_gene_fold_change(<Gse GSE8581>, False, 0, None)\n",
      "Loading data for GSE27543, id = 11960\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE8581/GSE8581_series_matrix.txt.gz\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE27543/GSE27543_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "255.21 ms in get_probes(80)\n",
      "  5.33 s in load_gse( series_id platform_id..., 11960, False)\n",
      "857.31 ms in get_gene_fold_change(<Gse GSE27543>, False, 0, None)\n",
      "862.71 s in Load/fold for DOID_3083\n",
      "Meta-Analyzing DOID_3083\n",
      "430.64 s in meta analysis of real data for DOID_3083\n",
      "  1.89 s in meta analysis of permutations for DOID_3083\n",
      "133.99 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "433.13 s in Meta analysis for DOID_3083\n",
      "DONE DOID_3083 analysis\n",
      "1297.00 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE27543/GSE27543_series_matrix.txt.gz\n",
      "40"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_3310 analysis\n",
      "  1.11 s in get_analysis_df(\"eczema == 'eczema'\", \"eczema_control == 'ec..., '')\n",
      "  1.11 s in Loading dataframe for DOID_3310\n",
      "Matching sources: 8\n",
      "Excluded 2 sources as single-class\n",
      "Stats: 6 sources, 5 series, 5 platforms, 129 samples\n",
      "Loading data and calculating fold change for DOID_3310\n",
      "Loading data for GSE12511, id = 664\n",
      "625.27 ms in get_probes(367)\n",
      " 13.99 s in load_gse( series_id platform_id..., 664, False)\n",
      "  2.38 s in get_gene_fold_change(<Gse GSE12511>, False, 0, None)\n",
      "Loading data for GSE13709, id = 966\n",
      "223.48 ms in get_probes(414)\n",
      "239.09 ms in get_probes(415)\n",
      "  4.05 s in load_gse( series_id platform_id..., 966, False)\n",
      "  1.34 s in get_gene_fold_change(<Gse GSE13709>, False, 0, None)\n",
      "Loading data for GSE16161, id = 1619\n",
      "656.46 ms in get_probes(4)\n",
      " 15.02 s in load_gse( series_id platform_id..., 1619, False)\n",
      "  3.03 s in get_gene_fold_change(<Gse GSE16161>, False, 0, None)\n",
      "Loading data for GSE26952, id = 4370\n",
      "377.51 ms in get_probes(74)\n",
      "  5.22 s in load_gse( series_id platform_id..., 4370, False)\n",
      "  1.35 s in get_gene_fold_change(<Gse GSE26952>, False, 0, None)\n",
      "Loading data for GSE32924, id = 5815\n",
      "628.66 ms in get_probes(4)\n",
      " 21.82 s in load_gse( series_id platform_id..., 5815, False)\n",
      "  3.09 s in get_gene_fold_change(<Gse GSE32924>, False, 0, None)\n",
      " 73.07 s in Load/fold for DOID_3310\n",
      "Meta-Analyzing DOID_3310\n",
      "400.80 s in meta analysis of real data for DOID_3310\n",
      "458.33 ms in meta analysis of permutations for DOID_3310\n",
      "133.99 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "401.87 s in Meta analysis for DOID_3310\n",
      "DONE DOID_3310 analysis\n",
      "476.25 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:3310 atopic dermatitis\n",
      "41"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_3312 analysis\n",
      "  1.03 s in get_analysis_df(\"bipolar_disorder == '..., \"bipolar_disorder_cont..., '')\n",
      "  1.04 s in Loading dataframe for DOID_3312\n",
      "Matching sources: 15\n",
      "Excluded 6 sources as single-class\n",
      "Stats: 9 sources, 9 series, 6 platforms, 438 samples\n",
      "Loading data and calculating fold change for DOID_3312\n",
      "Loading data for GSE11767, id = 446\n",
      "392.53 ms in get_probes(9)\n",
      "  3.94 s in load_gse( series_id platform_id..., 446, False)\n",
      "  1.30 s in get_gene_fold_change(<Gse GSE11767>, False, 0, None)\n",
      "Loading data for GSE23848, id = 3566\n",
      "483.47 ms in get_probes(343)\n",
      " 19.54 s in load_gse( series_id platform_id..., 3566, False)\n",
      "  2.22 s in get_gene_fold_change(<Gse GSE23848>, False, 0, None)\n",
      "Loading data for GSE39653, id = 7363\n",
      "711.53 ms in get_probes(674)\n",
      " 28.19 s in load_gse( series_id platform_id..., 7363, False)\n",
      "  2.97 s in get_gene_fold_change(<Gse GSE39653>, False, 0, None)\n",
      "Loading data for GSE46449, id = 8868\n",
      "641.65 ms in get_probes(4)\n",
      " 59.45 s in load_gse( series_id platform_id..., 8868, False)\n",
      "  7.30 s in get_gene_fold_change(<Gse GSE46449>, False, 0, None)\n",
      "Loading data for GSE5389, id = 10094\n",
      "394.35 ms in get_probes(2)\n",
      "  6.97 s in load_gse( series_id platform_id..., 10094, False)\n",
      "  1.82 s in get_gene_fold_change(<Gse GSE5389>, False, 0, None)\n",
      "Loading data for GSE5392, id = 10102\n",
      "395.19 ms in get_probes(2)\n",
      " 22.29 s in load_gse( series_id platform_id..., 10102, False)\n",
      "  3.42 s in get_gene_fold_change(<Gse GSE5392>, False, 0, None)\n",
      "Loading data for GSE53987, id = 10110\n",
      "629.34 ms in get_probes(4)\n",
      " 97.29 s in load_gse( series_id platform_id..., 10110, False)\n",
      "  8.70 s in get_gene_fold_change(<Gse GSE53987>, False, 0, None)\n",
      "Loading data for GSE7036, id = 11138\n",
      "623.48 ms in get_probes(4)\n",
      "  7.56 s in load_gse( series_id platform_id..., 11138, False)\n",
      "  2.24 s in get_gene_fold_change(<Gse GSE7036>, False, 0, None)\n",
      "Loading data for GSE62191, id = 13125\n",
      "708.76 ms in get_probes(10)\n",
      " 33.04 s in load_gse( series_id platform_id..., 13125, False)\n",
      "  4.11 s in get_gene_fold_change(<Gse GSE62191>, False, 0, None)\n",
      "315.56 s in Load/fold for DOID_3312\n",
      "Meta-Analyzing DOID_3312\n",
      "433.85 s in meta analysis of real data for DOID_3312\n",
      "923.38 ms in meta analysis of permutations for DOID_3312\n",
      "125.89 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "435.38 s in Meta analysis for DOID_3312\n",
      "DONE DOID_3312 analysis\n",
      "752.19 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:3312 bipolar disorder\n",
      "42"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_332 analysis\n",
      "851.23 ms in get_analysis_df(\"ALS == 'ALS'\", \"ALS_control == 'ALS_c..., '')\n",
      "855.41 ms in Loading dataframe for DOID_332\n",
      "Matching sources: 11\n",
      "Excluded 1 source as single-class\n",
      "Stats: 10 sources, 10 series, 7 platforms, 171 samples\n",
      "Loading data and calculating fold change for DOID_332\n",
      "Loading data for GSE18920, id = 2315\n",
      "  4.71 s in get_probes(54)\n",
      "111.90 s in load_gse( series_id platform_id..., 2315, False)\n",
      " 35.83 s in get_gene_fold_change(<Gse GSE18920>, False, 0, None)\n",
      "Loading data for GSE19332, id = 2413\n",
      "632.54 ms in get_probes(4)\n",
      "  8.82 s in load_gse( series_id platform_id..., 2413, False)\n",
      "  2.45 s in get_gene_fold_change(<Gse GSE19332>, False, 0, None)\n",
      "Loading data for GSE26276, id = 4160\n",
      "406.72 ms in get_probes(283)\n",
      "  6.01 s in load_gse( series_id platform_id..., 4160, False)\n",
      "  1.42 s in get_gene_fold_change(<Gse GSE26276>, False, 0, None)\n",
      "Loading data for GSE28253, id = 4659\n",
      "672.36 ms in get_probes(10)\n",
      " 15.94 s in load_gse( series_id platform_id..., 4659, False)\n",
      "  2.47 s in get_gene_fold_change(<Gse GSE28253>, False, 0, None)\n",
      "Loading data for GSE33855, id = 6038\n",
      "  4.88 s in get_probes(54)\n",
      " 63.26 s in load_gse( series_id platform_id..., 6038, False)\n",
      " 21.54 s in get_gene_fold_change(<Gse GSE33855>, False, 0, None)\n",
      "Loading data for GSE40328, id = 7530\n",
      " 40.42 ms in get_probes(643)\n",
      "984.98 ms in load_gse( series_id platform_id..., 7530, False)\n",
      "508.12 ms in get_gene_fold_change(<Gse GSE40328>, False, 0, None)\n",
      "Loading data for GSE4595, id = 8780\n",
      "659.16 ms in get_probes(26)\n",
      " 10.63 s in load_gse( series_id platform_id..., 8780, False)\n",
      "  2.34 s in get_gene_fold_change(<Gse GSE4595>, False, 0, None)\n",
      "Loading data for GSE56500, id = 10463\n",
      "  4.89 s in get_probes(54)\n",
      " 50.09 s in load_gse( series_id platform_id..., 10463, False)\n",
      " 18.34 s in get_gene_fold_change(<Gse GSE56500>, False, 0, None)\n",
      "Loading data for GSE56808, id = 10498\n",
      "626.72 ms in get_probes(4)\n",
      " 12.26 s in load_gse( series_id platform_id..., 10498, False)\n",
      "  2.29 s in get_gene_fold_change(<Gse GSE56808>, False, 0, None)\n",
      "Loading data for GSE833, id = 11454\n",
      "299.55 ms in get_probes(22)\n",
      "  2.16 s in load_gse( series_id platform_id..., 11454, False)\n",
      "701.36 ms in get_gene_fold_change(<Gse GSE833>, False, 0, None)\n",
      "377.61 s in Load/fold for DOID_332\n",
      "Meta-Analyzing DOID_332\n",
      "451.50 s in meta analysis of real data for DOID_332\n",
      "  5.83 s in meta analysis of permutations for DOID_332\n",
      "145.91 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "457.96 s in Meta analysis for DOID_332\n",
      "DONE DOID_332 analysis\n",
      "836.62 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:332 amyotrophic lateral sclerosis\n",
      "43"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_3393 analysis\n",
      "  1.53 s in get_analysis_df(\"CAD == 'CAD'\", \"CAD_control == 'CAD_c..., '')\n",
      "  1.53 s in Loading dataframe for DOID_3393\n",
      "Matching sources: 8\n",
      "Excluded 1 source as single-class\n",
      "Stats: 7 sources, 7 series, 6 platforms, 524 samples\n",
      "Loading data and calculating fold change for DOID_3393\n",
      "Loading data for GSE10195, id = 57\n",
      "663.67 ms in get_probes(26)\n",
      " 24.61 s in load_gse( series_id platform_id..., 57, False)\n",
      "  3.16 s in get_gene_fold_change(<Gse GSE10195>, False, 0, None)\n",
      "Loading data for GSE12288, id = 598\n",
      "397.14 ms in get_probes(2)\n",
      " 42.26 s in load_gse( series_id platform_id..., 598, False)\n",
      "  7.97 s in get_gene_fold_change(<Gse GSE12288>, False, 0, None)\n",
      "Loading data for GSE18608, id = 2234\n",
      "763.73 ms in get_probes(4)\n",
      "  8.59 s in load_gse( series_id platform_id..., 2234, False)\n",
      "  2.59 s in get_gene_fold_change(<Gse GSE18608>, False, 0, None)\n",
      "Loading data for GSE23561, id = 3492\n",
      "584.42 ms in get_probes(780)\n",
      " 17.03 s in load_gse( series_id platform_id..., 3492, False)\n",
      "  2.25 s in get_gene_fold_change(<Gse GSE23561>, False, 0, None)\n",
      "Loading data for GSE42148, id = 7959\n",
      "692.92 ms in get_probes(866)\n",
      " 17.94 s in load_gse( series_id platform_id..., 7959, False)\n",
      "  3.64 s in get_gene_fold_change(<Gse GSE42148>, False, 0, None)\n",
      "Loading data for GSE7638, id = 11305\n",
      "391.15 ms in get_probes(9)\n",
      " 41.36 s in load_gse( series_id platform_id..., 11305, False)\n",
      "  6.02 s in get_gene_fold_change(<Gse GSE7638>, False, 0, None)\n",
      "Loading data for GSE974, id = 11812\n",
      "386.98 ms in get_probes(2)\n",
      "  8.00 s in load_gse( series_id platform_id..., 11812, False)\n",
      "  2.12 s in get_gene_fold_change(<Gse GSE974>, False, 0, None)\n",
      "190.06 s in Load/fold for DOID_3393\n",
      "Meta-Analyzing DOID_3393\n",
      "415.26 s in meta analysis of real data for DOID_3393\n",
      "716.08 ms in meta analysis of permutations for DOID_3393\n",
      "133.04 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "416.59 s in Meta analysis for DOID_3393\n",
      "DONE DOID_3393 analysis\n",
      "608.37 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:3393 coronary artery disease\n",
      "44"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_418 analysis\n",
      "997.25 ms in get_analysis_df(\"systemic_scleroderma ..., \"systemic_scleroderma_..., '')\n",
      "  1.00 s in Loading dataframe for DOID_418\n",
      "Matching sources: 10\n",
      "Excluded 4 sources as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 4 sources, 4 series, 3 platforms, 157 samples\n",
      "Loading data and calculating fold change for DOID_418\n",
      "Loading data for GSE3886, id = 7181\n",
      "107.55 ms in get_probes(1119)\n",
      "  6.61 s in load_gse( series_id platform_id..., 7181, False)\n",
      "493.00 ms in get_gene_fold_change(<Gse GSE3886>, False, 0, None)\n",
      "Loading data for GSE4385, id = 8361\n",
      "106.08 ms in get_probes(1119)\n",
      "  6.50 s in load_gse( series_id platform_id..., 8361, False)\n",
      "417.23 ms in get_gene_fold_change(<Gse GSE4385>, False, 0, None)\n",
      "Loading data for GSE45536, id = 8688\n",
      "623.45 ms in get_probes(4)\n",
      " 56.86 s in load_gse( series_id platform_id..., 8688, False)\n",
      "  9.42 s in get_gene_fold_change(<Gse GSE45536>, False, 0, None)\n",
      "Loading data for GSE63903, id = 13309\n",
      "513.58 ms in get_probes(674)\n",
      " 10.49 s in load_gse( series_id platform_id..., 13309, False)\n",
      "  2.11 s in get_gene_fold_change(<Gse GSE63903>, False, 0, None)\n",
      " 94.24 s in Load/fold for DOID_418\n",
      "Meta-Analyzing DOID_418\n",
      "321.34 s in meta analysis of real data for DOID_418\n",
      "248.30 ms in meta analysis of permutations for DOID_418\n",
      "272.04 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "322.18 s in Meta analysis for DOID_418\n",
      "DONE DOID_418 analysis\n",
      "417.61 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:418 systemic scleroderma\n",
      "45"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_4481 analysis\n",
      "854.53 ms in get_analysis_df(\"allergic_rhinitis == ..., \"allergic_rhinitis_con..., '')\n",
      "858.97 ms in Loading dataframe for DOID_4481\n",
      "Matching sources: 12\n",
      "Stats: 12 sources, 11 series, 10 platforms, 352 samples\n",
      "Loading data and calculating fold change for DOID_4481\n",
      "Loading data for GSE19187, id = 2377\n",
      "415.71 ms in get_probes(283)\n",
      " 14.56 s in load_gse( series_id platform_id..., 2377, False)\n",
      "  2.27 s in get_gene_fold_change(<Gse GSE19187>, False, 0, None)\n",
      "Loading data for GSE1964, id = 2481\n",
      "112.97 ms in get_probes(654)\n",
      "  2.30 s in load_gse( series_id platform_id..., 2481, False)\n",
      "409.70 ms in get_gene_fold_change(<Gse GSE1964>, False, 0, None)\n",
      "Loading data for GSE37146, id = 6813\n",
      "422.10 ms in get_probes(17)\n",
      " 13.64 s in load_gse( series_id platform_id..., 6813, False)\n",
      "  2.02 s in get_gene_fold_change(<Gse GSE37146>, False, 0, None)\n",
      "Loading data for GSE37155, id = 6815\n",
      "510.50 ms in get_probes(674)\n",
      "  7.58 s in load_gse( series_id platform_id..., 6815, False)\n",
      "  1.87 s in get_gene_fold_change(<Gse GSE37155>, False, 0, None)\n",
      "Loading data for GSE44037, id = 8399\n",
      "810.77 ms in get_probes(901)\n",
      " 21.03 s in load_gse( series_id platform_id..., 8399, False)\n",
      "  3.12 s in get_gene_fold_change(<Gse GSE44037>, False, 0, None)\n",
      "Loading data for GSE46171, id = 8818\n",
      "701.67 ms in get_probes(1363)\n",
      "651.74 ms in get_probes(53)\n",
      " 42.54 s in load_gse( series_id platform_id..., 8818, False)\n",
      "  3.91 s in get_gene_fold_change(<Gse GSE46171>, False, 0, None)\n",
      "Loading data for GSE50101, id = 9523\n",
      "515.88 ms in get_probes(674)\n",
      " 22.78 s in load_gse( series_id platform_id..., 9523, False)\n",
      "  3.14 s in get_gene_fold_change(<Gse GSE50101>, False, 0, None)\n",
      "Loading data for GSE50223, id = 9538\n",
      "479.59 ms in get_probes(416)\n",
      " 43.85 s in load_gse( series_id platform_id..., 9538, False)\n",
      "  4.76 s in get_gene_fold_change(<Gse GSE50223>, False, 0, None)\n",
      "Loading data for GSE51392, id = 9724\n",
      "876.77 ms in get_probes(901)\n",
      " 38.75 s in load_gse( series_id platform_id..., 9724, False)\n",
      "  4.32 s in get_gene_fold_change(<Gse GSE51392>, False, 0, None)\n",
      "Loading data for GSE43523, id = 12101\n",
      "427.12 ms in get_probes(331)\n",
      "  5.09 s in load_gse( series_id platform_id..., 12101, False)\n",
      "  1.58 s in get_gene_fold_change(<Gse GSE43523>, False, 0, None)\n",
      "Loading data for GSE54522, id = 12433\n",
      "621.12 ms in get_probes(4)\n",
      " 33.04 s in load_gse( series_id platform_id..., 12433, False)\n",
      "  4.50 s in get_gene_fold_change(<Gse GSE54522>, False, 0, None)\n",
      "281.15 s in Load/fold for DOID_4481\n",
      "Meta-Analyzing DOID_4481\n",
      "463.05 s in meta analysis of real data for DOID_4481\n",
      "914.85 ms in meta analysis of permutations for DOID_4481\n",
      "109.91 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "464.60 s in Meta analysis for DOID_4481\n",
      "DONE DOID_4481 analysis\n",
      "746.82 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:4481 allergic rhinitis\n",
      "46"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_4606 analysis\n",
      "883.26 ms in get_analysis_df(\"bile_duct_cancer == '..., \"bile_duct_cancer_cont..., '')\n",
      "887.41 ms in Loading dataframe for DOID_4606\n",
      "Matching sources: 0\n",
      "FAIL Can't perform meta-analysis on no data\n",
      "950.47 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:4606 bile duct cancer\n",
      "47"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_5419 analysis\n",
      "896.83 ms in get_analysis_df(\"schizophrenia == 'sch..., \"Psychiatric_Control =..., '')\n",
      "901.10 ms in Loading dataframe for DOID_5419\n",
      "Matching sources: 28\n",
      "Excluded 4 sources as single-class\n",
      "Stats: 24 sources, 23 series, 13 platforms, 1486 samples\n",
      "Loading data and calculating fold change for DOID_5419\n",
      "Loading data for GSE12649, id = 702\n",
      "386.06 ms in get_probes(2)\n",
      " 24.31 s in load_gse( series_id platform_id..., 702, False)\n",
      "  2.83 s in get_gene_fold_change(<Gse GSE12649>, False, 0, None)\n",
      "Loading data for GSE12654, id = 704\n",
      "289.12 ms in get_probes(7)\n",
      "  7.81 s in load_gse( series_id platform_id..., 704, False)\n",
      "  1.15 s in get_gene_fold_change(<Gse GSE12654>, False, 0, None)\n",
      "Loading data for GSE17612, id = 1980\n",
      "629.49 ms in get_probes(4)\n",
      " 25.63 s in load_gse( series_id platform_id..., 1980, False)\n",
      "  4.76 s in get_gene_fold_change(<Gse GSE17612>, False, 0, None)\n",
      "Loading data for GSE18312, id = 2160\n",
      "529.67 ms in get_probes(280)\n",
      "  8.04 s in load_gse( series_id platform_id..., 2160, False)\n",
      "  2.38 s in get_gene_fold_change(<Gse GSE18312>, False, 0, None)\n",
      "Loading data for GSE19112, id = 2359\n",
      " 40.91 ms in get_probes(643)\n",
      "  2.27 s in load_gse( series_id platform_id..., 2359, False)\n",
      "334.33 ms in get_gene_fold_change(<Gse GSE19112>, False, 0, None)\n",
      "Loading data for GSE21138, id = 2862\n",
      "782.95 ms in get_probes(4)\n",
      " 16.64 s in load_gse( series_id platform_id..., 2862, False)\n",
      "  4.81 s in get_gene_fold_change(<Gse GSE21138>, False, 0, None)\n",
      "Loading data for GSE21935, id = 3048\n",
      "618.92 ms in get_probes(4)\n",
      " 29.96 s in load_gse( series_id platform_id..., 3048, False)\n",
      "  4.27 s in get_gene_fold_change(<Gse GSE21935>, False, 0, None)\n",
      "Loading data for GSE25673, id = 4035\n",
      "404.89 ms in get_probes(283)\n",
      "  9.81 s in load_gse( series_id platform_id..., 4035, False)\n",
      "  1.95 s in get_gene_fold_change(<Gse GSE25673>, False, 0, None)\n",
      "Loading data for GSE27383, id = 4471\n",
      "615.39 ms in get_probes(4)\n",
      " 46.80 s in load_gse( series_id platform_id..., 4471, False)\n",
      "  5.92 s in get_gene_fold_change(<Gse GSE27383>, False, 0, None)\n",
      "Loading data for GSE35974, id = 6545\n",
      "405.95 ms in get_probes(283)\n",
      " 46.42 s in load_gse( series_id platform_id..., 6545, False)\n",
      "  3.92 s in get_gene_fold_change(<Gse GSE35974>, False, 0, None)\n",
      "Loading data for GSE35977, id = 6547\n",
      "407.10 ms in get_probes(283)\n",
      " 54.20 s in load_gse( series_id platform_id..., 6547, False)\n",
      "  4.08 s in get_gene_fold_change(<Gse GSE35977>, False, 0, None)\n",
      "Loading data for GSE37981, id = 7007\n",
      "686.90 ms in get_probes(67)\n",
      " 14.75 s in load_gse( series_id platform_id..., 7007, False)\n",
      "  3.05 s in get_gene_fold_change(<Gse GSE37981>, False, 0, None)\n",
      "Loading data for GSE38481, id = 7104\n",
      "410.37 ms in get_probes(331)\n",
      " 11.16 s in load_gse( series_id platform_id..., 7104, False)\n",
      "  2.21 s in get_gene_fold_change(<Gse GSE38481>, False, 0, None)\n",
      "Loading data for GSE38484, id = 7105\n",
      "480.04 ms in get_probes(389)\n",
      "108.52 s in load_gse( series_id platform_id..., 7105, False)\n",
      "  8.23 s in get_gene_fold_change(<Gse GSE38484>, False, 0, None)\n",
      "Loading data for GSE38485, id = 7106\n",
      "411.74 ms in get_probes(331)\n",
      "645.29 ms in get_probes(389)\n",
      "119.71 s in load_gse( series_id platform_id..., 7106, False)\n",
      " 10.31 s in get_gene_fold_change(<Gse GSE38485>, False, 0, None)\n",
      "Loading data for GSE46509, id = 8882\n",
      "685.77 ms in get_probes(67)\n",
      " 13.58 s in load_gse( series_id platform_id..., 8882, False)\n",
      "  2.91 s in get_gene_fold_change(<Gse GSE46509>, False, 0, None)\n",
      "Loading data for GSE48072, id = 9177\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:5419 schizophrenia\n",
      "Loading URL ftp:https://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE48072/GSE48072_series_matrix.txt.gz ...\n",
      "Cache to"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "519.99 ms in get_probes(674)\n",
      "  5.68 s in load_gse( series_id platform_id..., 9177, False)\n",
      "  2.79 s in get_gene_fold_change(<Gse GSE48072>, False, 0, None)\n",
      "Loading data for GSE53987, id = 10110\n",
      "632.76 ms in get_probes(4)\n",
      " 97.32 s in load_gse( series_id platform_id..., 10110, False)\n",
      "  7.77 s in get_gene_fold_change(<Gse GSE53987>, False, 0, None)\n",
      "Loading data for GSE27356, id = 11959\n",
      " 38.72 ms in get_probes(1703)\n",
      "  1.59 s in load_gse( series_id platform_id..., 11959, False)\n",
      "259.60 ms in get_gene_fold_change(<Gse GSE27356>, False, 0, None)\n",
      "Loading data for GSE27601, id = 11963\n",
      " 38.98 ms in get_probes(1703)\n",
      "  1.38 s in load_gse( series_id platform_id..., 11963, False)\n",
      "173.81 ms in get_gene_fold_change(<Gse GSE27601>, False, 0, None)\n",
      "Loading data for GSE62105, id = 13113\n",
      "658.87 ms in get_probes(10)\n",
      "  9.42 s in load_gse( series_id platform_id..., 13113, False)\n",
      "  1.97 s in get_gene_fold_change(<Gse GSE62105>, False, 0, None)\n",
      "Loading data for GSE62191, id = 13125\n",
      "656.88 ms in get_probes(10)\n",
      " 31.80 s in load_gse( series_id platform_id..., 13125, False)\n",
      "  3.92 s in get_gene_fold_change(<Gse GSE62191>, False, 0, None)\n",
      "Loading data for GSE62333, id = 13140\n",
      "412.48 ms in get_probes(953)\n",
      " 16.61 s in load_gse( series_id platform_id..., 13140, False)\n",
      "  2.33 s in get_gene_fold_change(<Gse GSE62333>, False, 0, None)\n",
      "795.01 s in Load/fold for DOID_5419\n",
      "Meta-Analyzing DOID_5419\n",
      "470.79 s in meta analysis of real data for DOID_5419\n",
      "  1.72 s in meta analysis of permutations for DOID_5419\n",
      "107.05 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "473.12 s in Meta analysis for DOID_5419\n",
      "DONE DOID_5419 analysis\n",
      "1269.32 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " data/geo_mirror/DATA/SeriesMatrix/GSE48072/GSE48072_series_matrix.txt.gz\n",
      "48"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_635 analysis\n",
      "  1.52 s in get_analysis_df(\"HIV == 'HIV' or HIV_S..., \"HIV_control == 'HIV_c..., '')\n",
      "  1.53 s in Loading dataframe for DOID_635\n",
      "Matching sources: 27\n",
      "Excluded 3 sources as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 22 sources, 22 series, 13 platforms, 1973 samples\n",
      "Loading data and calculating fold change for DOID_635\n",
      "Loading data for GSE12597, id = 683\n",
      " 41.88 ms in get_probes(370)\n",
      "275.58 ms in load_gse( series_id platform_id..., 683, False)\n",
      "304.20 ms in get_gene_fold_change(<Gse GSE12597>, False, 0, None)\n",
      "Loading data for GSE14542, id = 1175\n",
      " 43.77 ms in get_probes(454)\n",
      "  6.33 s in load_gse( series_id platform_id..., 1175, False)\n",
      "350.76 ms in get_gene_fold_change(<Gse GSE14542>, False, 0, None)\n",
      "Loading data for GSE16363, id = 1658\n",
      "628.50 ms in get_probes(4)\n",
      " 25.98 s in load_gse( series_id platform_id..., 1658, False)\n",
      "  4.82 s in get_gene_fold_change(<Gse GSE16363>, False, 0, None)\n",
      "Loading data for GSE18233, id = 2140\n",
      "487.55 ms in get_probes(416)\n",
      "109.28 s in load_gse( series_id platform_id..., 2140, False)\n",
      "  8.96 s in get_gene_fold_change(<Gse GSE18233>, False, 0, None)\n",
      "Loading data for GSE19811, id = 2535\n",
      "390.61 ms in get_probes(2)\n",
      "  5.61 s in load_gse( series_id platform_id..., 2535, False)\n",
      "  1.46 s in get_gene_fold_change(<Gse GSE19811>, False, 0, None)\n",
      "Loading data for GSE28177, id = 4638\n",
      "623.44 ms in get_probes(4)\n",
      "  7.01 s in load_gse( series_id platform_id..., 4638, False)\n",
      "  2.18 s in get_gene_fold_change(<Gse GSE28177>, False, 0, None)\n",
      "Loading data for GSE28944, id = 4847\n",
      "111.59 ms in get_probes(929)\n",
      "453.37 ms in load_gse( series_id platform_id..., 4847, False)\n",
      "353.63 ms in get_gene_fold_change(<Gse GSE28944>, False, 0, None)\n",
      "Loading data for GSE29536, id = 4997\n",
      "428.85 ms in get_probes(17)\n",
      "181.82 s in load_gse( series_id platform_id..., 4997, False)\n",
      "  6.11 s in get_gene_fold_change(<Gse GSE29536>, False, 0, None)\n",
      "Loading data for GSE29939, id = 5106\n",
      "111.79 ms in get_probes(929)\n",
      "776.25 ms in load_gse( series_id platform_id..., 5106, False)\n",
      "437.36 ms in get_gene_fold_change(<Gse GSE29939>, False, 0, None)\n",
      "Loading data for GSE30310, id = 5201\n",
      "191.56 ms in get_probes(616)\n",
      "  8.27 s in load_gse( series_id platform_id..., 5201, False)\n",
      "  1.16 s in get_gene_fold_change(<Gse GSE30310>, False, 0, None)\n",
      "Loading data for GSE33877, id = 6044\n",
      "493.67 ms in get_probes(389)\n",
      "  8.24 s in load_gse( series_id platform_id..., 6044, False)\n",
      "  1.85 s in get_gene_fold_change(<Gse GSE33877>, False, 0, None)\n",
      "Loading data for GSE3489, id = 6268\n",
      "291.86 ms in get_probes(7)\n",
      "  3.81 s in load_gse( series_id platform_id..., 6268, False)\n",
      "  1.17 s in get_gene_fold_change(<Gse GSE3489>, False, 0, None)\n",
      "Loading data for GSE35864, id = 6523\n",
      "624.01 ms in get_probes(4)\n",
      " 47.44 s in load_gse( series_id platform_id..., 6523, False)\n",
      "  5.88 s in get_gene_fold_change(<Gse GSE35864>, False, 0, None)\n",
      "Loading data for GSE37250, id = 6847\n",
      "515.67 ms in get_probes(674)\n",
      "251.80 s in load_gse( series_id platform_id..., 6847, False)\n",
      " 25.40 s in get_gene_fold_change(<Gse GSE37250>, False, 0, None)\n",
      "Loading data for GSE39939, id = 7430\n",
      "513.91 ms in get_probes(674)\n",
      " 74.90 s in load_gse( series_id platform_id..., 7430, False)\n",
      "  8.27 s in get_gene_fold_change(<Gse GSE39939>, False, 0, None)\n",
      "Loading data for GSE39940, id = 7431\n",
      "522.92 ms in get_probes(674)\n",
      "158.48 s in load_gse( series_id platform_id..., 7431, False)\n",
      " 15.82 s in get_gene_fold_change(<Gse GSE39940>, False, 0, None)\n",
      "Loading data for GSE4124, id = 7745\n",
      "391.93 ms in get_probes(9)\n",
      "  8.47 s in load_gse( series_id platform_id..., 7745, False)\n",
      "  2.23 s in get_gene_fold_change(<Gse GSE4124>, False, 0, None)\n",
      "Loading data for GSE42058, id = 7937\n",
      "669.49 ms in get_probes(4)\n",
      "  7.46 s in load_gse( series_id platform_id..., 7937, False)\n",
      "  2.28 s in get_gene_fold_change(<Gse GSE42058>, False, 0, None)\n",
      "Loading data for GSE511, id = 9682\n",
      "218.15 ms in get_probes(22)\n",
      "  4.04 s in load_gse( series_id platform_id..., 9682, False)\n",
      "805.11 ms in get_gene_fold_change(<Gse GSE511>, False, 0, None)\n",
      "Loading data for GSE52900, id = 9963\n",
      "493.58 ms in get_probes(389)\n",
      " 11.16 s in load_gse( series_id platform_id..., 9963, False)\n",
      "  1.45 s in get_gene_fold_change(<Gse GSE52900>, False, 0, None)\n",
      "Loading data for GSE6740, id = 11026\n",
      "391.92 ms in get_probes(2)\n",
      " 14.59 s in load_gse( series_id platform_id..., 11026, False)\n",
      "  2.17 s in get_gene_fold_change(<Gse GSE6740>, False, 0, None)\n",
      "Loading data for GSE9927, id = 11872\n",
      "619.32 ms in get_probes(4)\n",
      " 12.15 s in load_gse( series_id platform_id..., 11872, False)\n",
      "  2.95 s in get_gene_fold_change(<Gse GSE9927>, False, 0, None)\n",
      "1053.46 s in Load/fold for DOID_635\n",
      "Meta-Analyzing DOID_635\n",
      "468.17 s in meta analysis of real data for DOID_635\n",
      "  1.32 s in meta analysis of permutations for DOID_635\n",
      "106.10 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "470.09 s in Meta analysis for DOID_635\n",
      "DONE DOID_635 analysis\n",
      "1525.38 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:635 acquired immunodeficiency syndrome\n",
      "49"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_7147 analysis\n",
      "  1.03 s in get_analysis_df(\"ankylosing_spondyliti..., \"ankylosing_spondyliti..., '')\n",
      "  1.03 s in Loading dataframe for DOID_7147\n",
      "Matching sources: 3\n",
      "Excluded 1 source by min samples\n",
      "Stats: 2 sources, 2 series, 2 platforms, 65 samples\n",
      "Loading data and calculating fold change for DOID_7147\n",
      "Loading data for GSE11886, id = 479\n",
      "638.99 ms in get_probes(4)\n",
      " 22.72 s in load_gse( series_id platform_id..., 479, False)\n",
      "  3.68 s in get_gene_fold_change(<Gse GSE11886>, False, 0, None)\n",
      "Loading data for GSE25101, id = 3902\n",
      "513.57 ms in get_probes(389)\n",
      "  7.90 s in load_gse( series_id platform_id..., 3902, False)\n",
      "  2.11 s in get_gene_fold_change(<Gse GSE25101>, False, 0, None)\n",
      " 37.20 s in Load/fold for DOID_7147\n",
      "Meta-Analyzing DOID_7147\n",
      "207.42 s in meta analysis of real data for DOID_7147\n",
      "200.72 ms in meta analysis of permutations for DOID_7147\n",
      "106.10 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "208.24 s in Meta analysis for DOID_7147\n",
      "DONE DOID_7147 analysis\n",
      "246.64 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:7147 ankylosing spondylitis\n",
      "50"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_7148 analysis\n",
      "853.14 ms in get_analysis_df(\"RA == 'RA'\", \"RA_control == 'RA_con..., '')\n",
      "857.36 ms in Loading dataframe for DOID_7148\n",
      "Matching sources: 21\n",
      "Excluded 1 source as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 18 sources, 17 series, 13 platforms, 607 samples\n",
      "Loading data and calculating fold change for DOID_7148\n",
      "Loading data for GSE10500, id = 137\n",
      "289.59 ms in get_probes(7)\n",
      "  2.22 s in load_gse( series_id platform_id..., 137, False)\n",
      "855.79 ms in get_gene_fold_change(<Gse GSE10500>, False, 0, None)\n",
      "Loading data for GSE11827, id = 457\n",
      " 38.24 ms in get_probes(36)\n",
      "  8.78 s in load_gse( series_id platform_id..., 457, False)\n",
      "199.79 ms in get_gene_fold_change(<Gse GSE11827>, False, 0, None)\n",
      "Loading data for GSE12021, id = 517\n",
      "380.47 ms in get_probes(2)\n",
      "343.15 ms in get_probes(50)\n",
      " 14.78 s in load_gse( series_id platform_id..., 517, False)\n",
      "  2.69 s in get_gene_fold_change(<Gse GSE12021>, False, 0, None)\n",
      "Loading data for GSE13026, id = 799\n",
      " 37.97 ms in get_probes(36)\n",
      "  7.97 s in load_gse( series_id platform_id..., 799, False)\n",
      "193.79 ms in get_gene_fold_change(<Gse GSE13026>, False, 0, None)\n",
      "Loading data for GSE15573, id = 1473\n",
      "445.99 ms in get_probes(17)\n",
      " 17.80 s in load_gse( series_id platform_id..., 1473, False)\n",
      "  2.33 s in get_gene_fold_change(<Gse GSE15573>, False, 0, None)\n",
      "Loading data for GSE17755, id = 2014\n",
      "326.36 ms in get_probes(51)\n",
      " 52.01 s in load_gse( series_id platform_id..., 2014, False)\n",
      "  3.89 s in get_gene_fold_change(<Gse GSE17755>, False, 0, None)\n",
      "Loading data for GSE1919, id = 2379\n",
      "288.36 ms in get_probes(8)\n",
      "  2.67 s in load_gse( series_id platform_id..., 2379, False)\n",
      "928.61 ms in get_gene_fold_change(<Gse GSE1919>, False, 0, None)\n",
      "Loading data for GSE2053, id = 2720\n",
      "225.81 ms in get_probes(688)\n",
      "  2.36 s in load_gse( series_id platform_id..., 2720, False)\n",
      "635.11 ms in get_gene_fold_change(<Gse GSE2053>, False, 0, None)\n",
      "Loading data for GSE21959, id = 3055\n",
      "655.44 ms in get_probes(10)\n",
      " 17.50 s in load_gse( series_id platform_id..., 3055, False)\n",
      "  3.05 s in get_gene_fold_change(<Gse GSE21959>, False, 0, None)\n",
      "Loading data for GSE23561, id = 3492\n",
      "558.63 ms in get_probes(780)\n",
      " 16.56 s in load_gse( series_id platform_id..., 3492, False)\n",
      "  2.10 s in get_gene_fold_change(<Gse GSE23561>, False, 0, None)\n",
      "Loading data for GSE29746, id = 5051\n",
      "666.97 ms in get_probes(10)\n",
      " 15.31 s in load_gse( series_id platform_id..., 5051, False)\n",
      "  1.83 s in get_gene_fold_change(<Gse GSE29746>, False, 0, None)\n",
      "Loading data for GSE4588, id = 8761\n",
      "622.37 ms in get_probes(4)\n",
      " 23.64 s in load_gse( series_id platform_id..., 8761, False)\n",
      "  3.66 s in get_gene_fold_change(<Gse GSE4588>, False, 0, None)\n",
      "Loading data for GSE49604, id = 9430\n",
      "519.46 ms in get_probes(674)\n",
      "  9.56 s in load_gse( series_id platform_id..., 9430, False)\n",
      "  1.98 s in get_gene_fold_change(<Gse GSE49604>, False, 0, None)\n",
      "Loading data for GSE55235, id = 10308\n",
      "392.68 ms in get_probes(2)\n",
      "  6.79 s in load_gse( series_id platform_id..., 10308, False)\n",
      "  1.63 s in get_gene_fold_change(<Gse GSE55235>, False, 0, None)\n",
      "Loading data for GSE55457, id = 10327\n",
      "385.98 ms in get_probes(2)\n",
      "  7.25 s in load_gse( series_id platform_id..., 10327, False)\n",
      "  1.68 s in get_gene_fold_change(<Gse GSE55457>, False, 0, None)\n",
      "Loading data for GSE57383, id = 12627\n",
      "643.29 ms in get_probes(901)\n",
      " 54.60 s in load_gse( series_id platform_id..., 12627, False)\n",
      "  4.34 s in get_gene_fold_change(<Gse GSE57383>, False, 0, None)\n",
      "Loading data for GSE57405, id = 12629\n",
      "644.98 ms in get_probes(901)\n",
      " 53.72 s in load_gse( series_id platform_id..., 12629, False)\n",
      "  4.33 s in get_gene_fold_change(<Gse GSE57405>, False, 0, None)\n",
      "355.39 s in Load/fold for DOID_7148\n",
      "Meta-Analyzing DOID_7148\n",
      "457.07 s in meta analysis of real data for DOID_7148\n",
      "  1.07 s in meta analysis of permutations for DOID_7148\n",
      " 99.90 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "458.75 s in Meta analysis for DOID_7148\n",
      "DONE DOID_7148 analysis\n",
      "815.24 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:7148 rheumatoid arthritis\n",
      "51"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_7693 analysis\n",
      "950.53 ms in get_analysis_df(\"AAA == 'AAA'\", \"AAA_control == 'AAA_c..., '')\n",
      "954.72 ms in Loading dataframe for DOID_7693\n",
      "Matching sources: 5\n",
      "Excluded 1 source by min samples\n",
      "Stats: 4 sources, 4 series, 3 platforms, 104 samples\n",
      "Loading data and calculating fold change for DOID_7693\n",
      "Loading data for GSE21803, id = 3020\n",
      " 76.31 ms in get_probes(724)\n",
      "409.19 ms in load_gse( series_id platform_id..., 3020, False)\n",
      "313.65 ms in get_gene_fold_change(<Gse GSE21803>, False, 0, None)\n",
      "Loading data for GSE47472, id = 9057\n",
      "670.53 ms in get_probes(674)\n",
      " 12.07 s in load_gse( series_id platform_id..., 9057, False)\n",
      "  2.43 s in get_gene_fold_change(<Gse GSE47472>, False, 0, None)\n",
      "Loading data for GSE7084, id = 11146\n",
      "378.98 ms in get_probes(39)\n",
      "  9.60 s in load_gse( series_id platform_id..., 11146, False)\n",
      "  1.43 s in get_gene_fold_change(<Gse GSE7084>, False, 0, None)\n",
      "Loading data for GSE57691, id = 12645\n",
      "732.48 ms in get_probes(674)\n",
      " 31.18 s in load_gse( series_id platform_id..., 12645, False)\n",
      "  3.91 s in get_gene_fold_change(<Gse GSE57691>, False, 0, None)\n",
      " 62.60 s in Load/fold for DOID_7693\n",
      "Meta-Analyzing DOID_7693\n",
      "367.08 s in meta analysis of real data for DOID_7693\n",
      "226.05 ms in meta analysis of permutations for DOID_7693\n",
      "103.95 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "367.89 s in Meta analysis for DOID_7693\n",
      "DONE DOID_7693 analysis\n",
      "431.62 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:7693 abdominal aortic aneurysm\n",
      "52"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_784 analysis\n",
      "717.48 ms in get_analysis_df(\"CKD == 'CKD'\", \"CKD_Control == 'CKD_C..., '')\n",
      "722.02 ms in Loading dataframe for DOID_784\n",
      "Matching sources: 2\n",
      "Excluded 1 source as single-class\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "857.18 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:784 chronic kidney failure\n",
      "53"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_824 analysis\n",
      "522.07 ms in get_analysis_df(\"periodontitis == 'per..., \"periodontitis_control..., '')\n",
      "526.46 ms in Loading dataframe for DOID_824\n",
      "Matching sources: 3\n",
      "Excluded 1 source by min samples\n",
      "Stats: 2 sources, 2 series, 2 platforms, 33 samples\n",
      "Loading data and calculating fold change for DOID_824\n",
      "Loading data for GSE27993, id = 4587\n",
      "404.76 ms in get_probes(283)\n",
      "  6.12 s in load_gse( series_id platform_id..., 4587, False)\n",
      "  1.47 s in get_gene_fold_change(<Gse GSE27993>, False, 0, None)\n",
      "Loading data for GSE43525, id = 8303\n",
      "514.93 ms in get_probes(674)\n",
      " 15.08 s in load_gse( series_id platform_id..., 8303, False)\n",
      "  2.45 s in get_gene_fold_change(<Gse GSE43525>, False, 0, None)\n",
      " 25.61 s in Load/fold for DOID_824\n",
      "Meta-Analyzing DOID_824\n",
      "324.19 s in meta analysis of real data for DOID_824\n",
      "152.86 ms in meta analysis of permutations for DOID_824\n",
      "108.00 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "324.99 s in Meta analysis for DOID_824\n",
      "DONE DOID_824 analysis\n",
      "351.29 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:824 periodontitis\n",
      "54"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_8577 analysis\n",
      "779.32 ms in get_analysis_df(\"UC == 'UC'\", \"UC_control == 'UC_con..., '')\n",
      "783.89 ms in Loading dataframe for DOID_8577\n",
      "Matching sources: 18\n",
      "Excluded 1 source as single-class\n",
      "Stats: 17 sources, 17 series, 12 platforms, 838 samples\n",
      "Loading data and calculating fold change for DOID_8577\n",
      "Loading data for GSE10191, id = 56\n",
      "402.45 ms in get_probes(25)\n",
      "  7.95 s in load_gse( series_id platform_id..., 56, False)\n",
      "  1.68 s in get_gene_fold_change(<Gse GSE10191>, False, 0, None)\n",
      "Loading data for GSE10616, id = 169\n",
      "401.80 ms in get_probes(25)\n",
      " 16.80 s in load_gse( series_id platform_id..., 169, False)\n",
      "  1.71 s in get_gene_fold_change(<Gse GSE10616>, False, 0, None)\n",
      "Loading data for GSE11223, id = 317\n",
      "637.65 ms in get_probes(26)\n",
      " 77.71 s in load_gse( series_id platform_id..., 317, False)\n",
      " 10.00 s in get_gene_fold_change(<Gse GSE11223>, False, 0, None)\n",
      "Loading data for GSE1710, id = 1852\n",
      "360.75 ms in get_probes(18)\n",
      " 15.28 s in load_gse( series_id platform_id..., 1852, False)\n",
      "  1.41 s in get_gene_fold_change(<Gse GSE1710>, False, 0, None)\n",
      "Loading data for GSE22619, id = 3258\n",
      "620.39 ms in get_probes(4)\n",
      " 11.61 s in load_gse( series_id platform_id..., 3258, False)\n",
      "  2.85 s in get_gene_fold_change(<Gse GSE22619>, False, 0, None)\n",
      "Loading data for GSE24287, id = 3687\n",
      "499.01 ms in get_probes(53)\n",
      " 31.25 s in load_gse( series_id platform_id..., 3687, False)\n",
      "  3.46 s in get_gene_fold_change(<Gse GSE24287>, False, 0, None)\n",
      "Loading data for GSE2461, id = 3778\n",
      "383.07 ms in get_probes(2)\n",
      "  2.80 s in load_gse( series_id platform_id..., 3778, False)\n",
      "  1.25 s in get_gene_fold_change(<Gse GSE2461>, False, 0, None)\n",
      "Loading data for GSE3365, id = 5991\n",
      "385.28 ms in get_probes(2)\n",
      " 29.58 s in load_gse( series_id platform_id..., 5991, False)\n",
      "  2.92 s in get_gene_fold_change(<Gse GSE3365>, False, 0, None)\n",
      "Loading data for GSE36807, id = 6726\n",
      "619.11 ms in get_probes(4)\n",
      " 24.55 s in load_gse( series_id platform_id..., 6726, False)\n",
      "  3.16 s in get_gene_fold_change(<Gse GSE36807>, False, 0, None)\n",
      "Loading data for GSE38713, id = 7147\n",
      "611.67 ms in get_probes(4)\n",
      " 29.65 s in load_gse( series_id platform_id..., 7147, False)\n",
      "  4.28 s in get_gene_fold_change(<Gse GSE38713>, False, 0, None)\n",
      "Loading data for GSE6731, id = 11023\n",
      "288.17 ms in get_probes(7)\n",
      "  5.00 s in load_gse( series_id platform_id..., 11023, False)\n",
      "971.40 ms in get_gene_fold_change(<Gse GSE6731>, False, 0, None)\n",
      "Loading data for GSE9452, id = 11743\n",
      "633.45 ms in get_probes(4)\n",
      " 14.23 s in load_gse( series_id platform_id..., 11743, False)\n",
      "  2.56 s in get_gene_fold_change(<Gse GSE9452>, False, 0, None)\n",
      "Loading data for GSE42911, id = 12095\n",
      "635.22 ms in get_probes(1132)\n",
      " 10.62 s in load_gse( series_id platform_id..., 12095, False)\n",
      "  2.30 s in get_gene_fold_change(<Gse GSE42911>, False, 0, None)\n",
      "Loading data for GSE48634, id = 12194\n",
      "524.40 ms in get_probes(674)\n",
      " 50.54 s in load_gse( series_id platform_id..., 12194, False)\n",
      "  6.66 s in get_gene_fold_change(<Gse GSE48634>, False, 0, None)\n",
      "Loading data for GSE53306, id = 12370\n",
      "487.80 ms in get_probes(912)\n",
      " 13.12 s in load_gse( series_id platform_id..., 12370, False)\n",
      "  2.97 s in get_gene_fold_change(<Gse GSE53306>, False, 0, None)\n",
      "Loading data for GSE59071, id = 12790\n",
      "404.84 ms in get_probes(283)\n",
      " 43.87 s in load_gse( series_id platform_id..., 12790, False)\n",
      "  4.36 s in get_gene_fold_change(<Gse GSE59071>, False, 0, None)\n",
      "Loading data for GSE65114, id = 13436\n",
      "352.01 ms in get_probes(1338)\n",
      " 17.99 s in load_gse( series_id platform_id..., 13436, False)\n",
      "  1.66 s in get_gene_fold_change(<Gse GSE65114>, False, 0, None)\n",
      "462.60 s in Load/fold for DOID_8577\n",
      "Meta-Analyzing DOID_8577\n",
      "457.34 s in meta analysis of real data for DOID_8577\n",
      "  1.31 s in meta analysis of permutations for DOID_8577\n",
      "108.96 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "459.25 s in Meta analysis for DOID_8577\n",
      "DONE DOID_8577 analysis\n",
      "922.87 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:8577 ulcerative colitis\n",
      "55"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_8778 analysis\n",
      "  1.14 s in get_analysis_df(\"CD == 'CD'\", \"CD_control == 'CD_con..., '')\n",
      "  1.14 s in Loading dataframe for DOID_8778\n",
      "Matching sources: 20\n",
      "Excluded 1 source as single-class\n",
      "Excluded 7 sources by min samples\n",
      "Stats: 12 sources, 12 series, 11 platforms, 743 samples\n",
      "Loading data and calculating fold change for DOID_8778\n",
      "Loading data for GSE10616, id = 169\n",
      "398.22 ms in get_probes(25)\n",
      " 17.10 s in load_gse( series_id platform_id..., 169, False)\n",
      "  2.46 s in get_gene_fold_change(<Gse GSE10616>, False, 0, None)\n",
      "Loading data for GSE1710, id = 1852\n",
      "348.71 ms in get_probes(18)\n",
      " 15.16 s in load_gse( series_id platform_id..., 1852, False)\n",
      "  1.42 s in get_gene_fold_change(<Gse GSE1710>, False, 0, None)\n",
      "Loading data for GSE17594, id = 1976\n",
      "632.79 ms in get_probes(10)\n",
      "  2.49 s in load_gse( series_id platform_id..., 1976, False)\n",
      "  2.12 s in get_gene_fold_change(<Gse GSE17594>, False, 0, None)\n",
      "Loading data for GSE20881, id = 2803\n",
      "635.53 ms in get_probes(26)\n",
      " 61.36 s in load_gse( series_id platform_id..., 2803, False)\n",
      "  8.74 s in get_gene_fold_change(<Gse GSE20881>, False, 0, None)\n",
      "Loading data for GSE24287, id = 3687\n",
      "504.27 ms in get_probes(53)\n",
      " 31.14 s in load_gse( series_id platform_id..., 3687, False)\n",
      "  4.27 s in get_gene_fold_change(<Gse GSE24287>, False, 0, None)\n",
      "Loading data for GSE3365, id = 5991\n",
      "381.30 ms in get_probes(2)\n",
      " 29.52 s in load_gse( series_id platform_id..., 5991, False)\n",
      "  3.83 s in get_gene_fold_change(<Gse GSE3365>, False, 0, None)\n",
      "Loading data for GSE36807, id = 6726\n",
      "612.43 ms in get_probes(4)\n",
      " 24.01 s in load_gse( series_id platform_id..., 6726, False)\n",
      "  2.98 s in get_gene_fold_change(<Gse GSE36807>, False, 0, None)\n",
      "Loading data for GSE52746, id = 9944\n",
      "364.48 ms in get_probes(1438)\n",
      "  6.94 s in load_gse( series_id platform_id..., 9944, False)\n",
      "  1.99 s in get_gene_fold_change(<Gse GSE52746>, False, 0, None)\n",
      "Loading data for GSE60083, id = 10812\n",
      "473.05 ms in get_probes(416)\n",
      " 12.47 s in load_gse( series_id platform_id..., 10812, False)\n",
      "  4.15 s in get_gene_fold_change(<Gse GSE60083>, False, 0, None)\n",
      "Loading data for GSE6731, id = 11023\n",
      "287.74 ms in get_probes(7)\n",
      "  5.00 s in load_gse( series_id platform_id..., 11023, False)\n",
      "  1.02 s in get_gene_fold_change(<Gse GSE6731>, False, 0, None)\n",
      "Loading data for GSE9686, id = 11793\n",
      "411.68 ms in get_probes(25)\n",
      " 10.53 s in load_gse( series_id platform_id..., 11793, False)\n",
      "  1.96 s in get_gene_fold_change(<Gse GSE9686>, False, 0, None)\n",
      "Loading data for GSE48634, id = 12194\n",
      "527.24 ms in get_probes(674)\n",
      " 50.03 s in load_gse( series_id platform_id..., 12194, False)\n",
      "  4.81 s in get_gene_fold_change(<Gse GSE48634>, False, 0, None)\n",
      "308.64 s in Load/fold for DOID_8778\n",
      "Meta-Analyzing DOID_8778\n",
      "411.59 s in meta analysis of real data for DOID_8778\n",
      "834.50 ms in meta analysis of permutations for DOID_8778\n",
      "123.02 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "413.03 s in Meta analysis for DOID_8778\n",
      "DONE DOID_8778 analysis\n",
      "723.06 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:8778 Crohn's disease\n",
      "56"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_8893 analysis\n",
      "955.27 ms in get_analysis_df(\"psoriasis == 'psorias..., \"psoriasis_control == ..., '')\n",
      "959.42 ms in Loading dataframe for DOID_8893\n",
      "Matching sources: 11\n",
      "Excluded 2 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 8 sources, 8 series, 7 platforms, 429 samples\n",
      "Loading data and calculating fold change for DOID_8893\n",
      "Loading data for GSE13355, id = 878\n",
      "623.07 ms in get_probes(4)\n",
      " 94.43 s in load_gse( series_id platform_id..., 878, False)\n",
      "  7.56 s in get_gene_fold_change(<Gse GSE13355>, False, 0, None)\n",
      "Loading data for GSE32407, id = 5703\n",
      "390.81 ms in get_probes(9)\n",
      " 14.97 s in load_gse( series_id platform_id..., 5703, False)\n",
      "  2.58 s in get_gene_fold_change(<Gse GSE32407>, False, 0, None)\n",
      "Loading data for GSE47598, id = 9087\n",
      "597.05 ms in get_probes(674)\n",
      " 15.37 s in load_gse( series_id platform_id..., 9087, False)\n",
      "  2.52 s in get_gene_fold_change(<Gse GSE47598>, False, 0, None)\n",
      "Loading data for GSE57225, id = 10556\n",
      "665.53 ms in get_probes(1010)\n",
      " 31.70 s in load_gse( series_id platform_id..., 10556, False)\n",
      "  3.01 s in get_gene_fold_change(<Gse GSE57225>, False, 0, None)\n",
      "Loading data for GSE57383, id = 12627\n",
      "644.49 ms in get_probes(901)\n",
      " 54.00 s in load_gse( series_id platform_id..., 12627, False)\n",
      "  4.51 s in get_gene_fold_change(<Gse GSE57383>, False, 0, None)\n",
      "Loading data for GSE57405, id = 12629\n",
      "647.41 ms in get_probes(901)\n",
      " 53.04 s in load_gse( series_id platform_id..., 12629, False)\n",
      "  4.10 s in get_gene_fold_change(<Gse GSE57405>, False, 0, None)\n",
      "Loading data for GSE61281, id = 12998\n",
      "731.54 ms in get_probes(53)\n",
      " 27.77 s in load_gse( series_id platform_id..., 12998, False)\n",
      "  2.78 s in get_gene_fold_change(<Gse GSE61281>, False, 0, None)\n",
      "Loading data for GSE63741, id = 13298\n",
      " 42.53 ms in get_probes(1794)\n",
      "  2.58 s in load_gse( series_id platform_id..., 13298, False)\n",
      "205.63 ms in get_gene_fold_change(<Gse GSE63741>, False, 0, None)\n",
      "323.77 s in Load/fold for DOID_8893\n",
      "Meta-Analyzing DOID_8893\n",
      "443.27 s in meta analysis of real data for DOID_8893\n",
      "638.21 ms in meta analysis of permutations for DOID_8893\n",
      "106.81 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "444.53 s in Meta analysis for DOID_8893\n",
      "DONE DOID_8893 analysis\n",
      "769.45 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:8893 psoriasis\n",
      "57"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_8986 analysis\n",
      "726.99 ms in get_analysis_df(\"narcolepsy == 'narcol..., \"narcolepsy_control ==..., '')\n",
      "731.35 ms in Loading dataframe for DOID_8986\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "862.07 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:8986 narcolepsy\n",
      "58"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9008 analysis\n",
      "668.21 ms in get_analysis_df(\"PsA == 'PsA'\", \"PsA_control == 'PsA_c..., '')\n",
      "672.32 ms in Loading dataframe for DOID_9008\n",
      "Matching sources: 3\n",
      "Stats: 3 sources, 3 series, 2 platforms, 141 samples\n",
      "Loading data and calculating fold change for DOID_9008\n",
      "Loading data for GSE57383, id = 12627\n",
      "651.33 ms in get_probes(901)\n",
      " 54.14 s in load_gse( series_id platform_id..., 12627, False)\n",
      "  4.85 s in get_gene_fold_change(<Gse GSE57383>, False, 0, None)\n",
      "Loading data for GSE57405, id = 12629\n",
      "651.99 ms in get_probes(901)\n",
      " 53.32 s in load_gse( series_id platform_id..., 12629, False)\n",
      "  4.81 s in get_gene_fold_change(<Gse GSE57405>, False, 0, None)\n",
      "Loading data for GSE61281, id = 12998\n",
      "693.55 ms in get_probes(53)\n",
      " 26.74 s in load_gse( series_id platform_id..., 12998, False)\n",
      "  2.77 s in get_gene_fold_change(<Gse GSE61281>, False, 0, None)\n",
      "147.75 s in Load/fold for DOID_9008\n",
      "Meta-Analyzing DOID_9008\n",
      "393.35 s in meta analysis of real data for DOID_9008\n",
      "313.61 ms in meta analysis of permutations for DOID_9008\n",
      "109.91 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "394.26 s in Meta analysis for DOID_9008\n",
      "DONE DOID_9008 analysis\n",
      "542.85 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9008 psoriatic arthritis\n",
      "59"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9074 analysis\n",
      "994.35 ms in get_analysis_df(\"SLE == 'SLE'\", \"SLE_control == 'SLE_c..., '')\n",
      "998.59 ms in Loading dataframe for DOID_9074\n",
      "Matching sources: 23\n",
      "Excluded 3 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 19 sources, 18 series, 12 platforms, 1375 samples\n",
      "Loading data and calculating fold change for DOID_9074\n",
      "Loading data for GSE10325, id = 92\n",
      "397.73 ms in get_probes(2)\n",
      " 12.88 s in load_gse( series_id platform_id..., 92, False)\n",
      "  2.92 s in get_gene_fold_change(<Gse GSE10325>, False, 0, None)\n",
      "Loading data for GSE11907, id = 488\n",
      "387.36 ms in get_probes(2)\n",
      "338.73 ms in get_probes(50)\n",
      " 94.71 s in load_gse( series_id platform_id..., 488, False)\n",
      "  6.01 s in get_gene_fold_change(<Gse GSE11907>, False, 0, None)\n",
      "Loading data for GSE12374, id = 618\n",
      "326.56 ms in get_probes(51)\n",
      "  5.63 s in load_gse( series_id platform_id..., 618, False)\n",
      "  1.27 s in get_gene_fold_change(<Gse GSE12374>, False, 0, None)\n",
      "Loading data for GSE17755, id = 2014\n",
      "324.90 ms in get_probes(51)\n",
      " 51.63 s in load_gse( series_id platform_id..., 2014, False)\n",
      "  2.25 s in get_gene_fold_change(<Gse GSE17755>, False, 0, None)\n",
      "Loading data for GSE20864, id = 2798\n",
      "327.71 ms in get_probes(51)\n",
      " 15.96 s in load_gse( series_id platform_id..., 2798, False)\n",
      "  2.07 s in get_gene_fold_change(<Gse GSE20864>, False, 0, None)\n",
      "Loading data for GSE21649, id = 2983\n",
      "346.13 ms in get_probes(720)\n",
      "  4.40 s in load_gse( series_id platform_id..., 2983, False)\n",
      "  1.17 s in get_gene_fold_change(<Gse GSE21649>, False, 0, None)\n",
      "Loading data for GSE22098, id = 3098\n",
      "485.52 ms in get_probes(389)\n",
      "135.92 s in load_gse( series_id platform_id..., 3098, False)\n",
      "  8.71 s in get_gene_fold_change(<Gse GSE22098>, False, 0, None)\n",
      "Loading data for GSE23203, id = 3404\n",
      "351.27 ms in get_probes(774)\n",
      "  7.92 s in load_gse( series_id platform_id..., 3404, False)\n",
      "  1.65 s in get_gene_fold_change(<Gse GSE23203>, False, 0, None)\n",
      "Loading data for GSE27427, id = 4483\n",
      "446.01 ms in get_probes(343)\n",
      " 21.41 s in load_gse( series_id platform_id..., 4483, False)\n",
      "  2.58 s in get_gene_fold_change(<Gse GSE27427>, False, 0, None)\n",
      "Loading data for GSE29536, id = 4997\n",
      "416.49 ms in get_probes(17)\n",
      "177.81 s in load_gse( series_id platform_id..., 4997, False)\n",
      "  7.72 s in get_gene_fold_change(<Gse GSE29536>, False, 0, None)\n",
      "Loading data for GSE30153, id = 5158\n",
      "784.15 ms in get_probes(4)\n",
      " 12.35 s in load_gse( series_id platform_id..., 5158, False)\n",
      "  3.08 s in get_gene_fold_change(<Gse GSE30153>, False, 0, None)\n",
      "Loading data for GSE37356, id = 6873\n",
      "508.06 ms in get_probes(674)\n",
      " 31.03 s in load_gse( series_id platform_id..., 6873, False)\n",
      "  4.46 s in get_gene_fold_change(<Gse GSE37356>, False, 0, None)\n",
      "Loading data for GSE4588, id = 8761\n",
      "638.26 ms in get_probes(4)\n",
      " 23.10 s in load_gse( series_id platform_id..., 8761, False)\n",
      "  3.65 s in get_gene_fold_change(<Gse GSE4588>, False, 0, None)\n",
      "Loading data for GSE50395, id = 9551\n",
      "681.78 ms in get_probes(10)\n",
      "  9.00 s in load_gse( series_id platform_id..., 9551, False)\n",
      "  1.78 s in get_gene_fold_change(<Gse GSE50395>, False, 0, None)\n",
      "Loading data for GSE50635, id = 9591\n",
      "403.44 ms in get_probes(283)\n",
      " 17.18 s in load_gse( series_id platform_id..., 9591, False)\n",
      "  2.57 s in get_gene_fold_change(<Gse GSE50635>, False, 0, None)\n",
      "Loading data for GSE51997, id = 9826\n",
      "623.68 ms in get_probes(4)\n",
      " 21.57 s in load_gse( series_id platform_id..., 9826, False)\n",
      "  3.91 s in get_gene_fold_change(<Gse GSE51997>, False, 0, None)\n",
      "Loading data for GSE8650, id = 11535\n",
      "326.88 ms in get_probes(50)\n",
      " 22.49 s in load_gse( series_id platform_id..., 11535, False)\n",
      "  2.05 s in get_gene_fold_change(<Gse GSE8650>, False, 0, None)\n",
      "Loading data for GSE55447, id = 12480\n",
      "669.90 ms in get_probes(674)\n",
      " 65.70 s in load_gse( series_id platform_id..., 12480, False)\n",
      "  7.39 s in get_gene_fold_change(<Gse GSE55447>, False, 0, None)\n",
      "801.76 s in Load/fold for DOID_9074\n",
      "Meta-Analyzing DOID_9074\n",
      "469.04 s in meta analysis of real data for DOID_9074\n",
      "  1.28 s in meta analysis of permutations for DOID_9074\n",
      " 23.13 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "470.61 s in Meta analysis for DOID_9074\n",
      "DONE DOID_9074 analysis\n",
      "1273.63 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9074 systemic lupus erythematosus\n",
      "60"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9206 analysis\n",
      "  1.01 s in get_analysis_df(\"BE_Tissue == 'BE_Tiss..., \"EAC_Non_Tumor == 'EAC..., '')\n",
      "  1.01 s in Loading dataframe for DOID_9206\n",
      "Matching sources: 16\n",
      "Excluded 10 sources as single-class\n",
      "Excluded 2 sources by min samples\n",
      "Stats: 4 sources, 4 series, 3 platforms, 155 samples\n",
      "Loading data and calculating fold change for DOID_9206\n",
      "Loading data for GSE34619, id = 6215\n",
      "407.37 ms in get_probes(283)\n",
      "  9.69 s in load_gse( series_id platform_id..., 6215, False)\n",
      "  1.54 s in get_gene_fold_change(<Gse GSE34619>, False, 0, None)\n",
      "Loading data for GSE36223, id = 6608\n",
      "406.23 ms in get_probes(9)\n",
      "  6.31 s in load_gse( series_id platform_id..., 6608, False)\n",
      "  2.12 s in get_gene_fold_change(<Gse GSE36223>, False, 0, None)\n",
      "Loading data for GSE39491, id = 7332\n",
      "392.33 ms in get_probes(9)\n",
      " 26.65 s in load_gse( series_id platform_id..., 7332, False)\n",
      "  3.21 s in get_gene_fold_change(<Gse GSE39491>, False, 0, None)\n",
      "Loading data for GSE6059, id = 10854\n",
      " 75.98 ms in get_probes(1512)\n",
      "  8.63 s in load_gse( series_id platform_id..., 10854, False)\n",
      "372.52 ms in get_gene_fold_change(<Gse GSE6059>, False, 0, None)\n",
      " 59.74 s in Load/fold for DOID_9206\n",
      "Meta-Analyzing DOID_9206\n",
      "246.52 s in meta analysis of real data for DOID_9206\n",
      "184.46 ms in meta analysis of permutations for DOID_9206\n",
      "165.94 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "247.31 s in Meta analysis for DOID_9206\n",
      "DONE DOID_9206 analysis\n",
      "308.24 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9206 Barrett's esophagus\n",
      "61"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9296 analysis\n",
      "661.29 ms in get_analysis_df(\"cleft_lip == 'cleft_l..., \"cleft_lip_control == ..., '')\n",
      "665.78 ms in Loading dataframe for DOID_9296\n",
      "Matching sources: 1\n",
      "FAIL Can't perform meta-analysis on single source\n",
      "797.02 ms in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9296 cleft lip\n",
      "62"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9352 analysis\n",
      "733.37 ms in get_analysis_df(\"T2D == 'T2D'\", \"T2D_control == 'T2D_c..., '')\n",
      "737.53 ms in Loading dataframe for DOID_9352\n",
      "Matching sources: 36\n",
      "Excluded 4 sources as single-class\n",
      "Excluded 1 source by min samples\n",
      "Stats: 31 sources, 25 series, 19 platforms, 854 samples\n",
      "Loading data and calculating fold change for DOID_9352\n",
      "Loading data for GSE121, id = 539\n",
      "208.38 ms in get_probes(338)\n",
      "214.39 ms in get_probes(339)\n",
      "208.06 ms in get_probes(22)\n",
      "246.73 ms in get_probes(340)\n",
      "199.74 ms in get_probes(341)\n",
      " 10.95 s in load_gse( series_id platform_id..., 539, False)\n",
      "  2.39 s in get_gene_fold_change(<Gse GSE121>, False, 0, None)\n",
      "Loading data for GSE12643, id = 697\n",
      "281.04 ms in get_probes(7)\n",
      "  3.92 s in load_gse( series_id platform_id..., 697, False)\n",
      "  1.03 s in get_gene_fold_change(<Gse GSE12643>, False, 0, None)\n",
      "Loading data for GSE13015, id = 796\n",
      "460.82 ms in get_probes(343)\n",
      "480.53 ms in get_probes(389)\n",
      " 57.75 s in load_gse( series_id platform_id..., 796, False)\n",
      "  2.56 s in get_gene_fold_change(<Gse GSE13015>, False, 0, None)\n",
      "Loading data for GSE13760, id = 979\n",
      "384.94 ms in get_probes(9)\n",
      "  6.80 s in load_gse( series_id platform_id..., 979, False)\n",
      "  1.69 s in get_gene_fold_change(<Gse GSE13760>, False, 0, None)\n",
      "Loading data for GSE15653, id = 1495\n",
      "381.04 ms in get_probes(2)\n",
      "  5.29 s in load_gse( series_id platform_id..., 1495, False)\n",
      "  1.49 s in get_gene_fold_change(<Gse GSE15653>, False, 0, None)\n",
      "Loading data for GSE15790, id = 1522\n",
      "340.33 ms in get_probes(511)\n",
      "  8.70 s in load_gse( series_id platform_id..., 1522, False)\n",
      "  1.82 s in get_gene_fold_change(<Gse GSE15790>, False, 0, None)\n",
      "Loading data for GSE16415, id = 1671\n",
      "347.86 ms in get_probes(60)\n",
      "  6.69 s in load_gse( series_id platform_id..., 1671, False)\n",
      "  1.27 s in get_gene_fold_change(<Gse GSE16415>, False, 0, None)\n",
      "Loading data for GSE18732, id = 2269\n",
      " 38.28 ms in get_probes(628)\n",
      " 34.60 s in load_gse( series_id platform_id..., 2269, False)\n",
      "262.89 ms in get_gene_fold_change(<Gse GSE18732>, False, 0, None)\n",
      "Loading data for GSE19420, id = 2433\n",
      "616.83 ms in get_probes(4)\n",
      " 26.92 s in load_gse( series_id platform_id..., 2433, False)\n",
      "  3.92 s in get_gene_fold_change(<Gse GSE19420>, False, 0, None)\n",
      "Loading data for GSE20966, id = 2827\n",
      "694.88 ms in get_probes(67)\n",
      " 14.18 s in load_gse( series_id platform_id..., 2827, False)\n",
      "  3.19 s in get_gene_fold_change(<Gse GSE20966>, False, 0, None)\n",
      "Loading data for GSE21340, id = 2908\n",
      "213.47 ms in get_probes(22)\n",
      "  2.11 s in load_gse( series_id platform_id..., 2908, False)\n",
      "657.35 ms in get_gene_fold_change(<Gse GSE21340>, False, 0, None)\n",
      "Loading data for GSE23561, id = 3492\n",
      "560.53 ms in get_probes(780)\n",
      " 16.12 s in load_gse( series_id platform_id..., 3492, False)\n",
      "  2.15 s in get_gene_fold_change(<Gse GSE23561>, False, 0, None)\n",
      "Loading data for GSE25462, id = 3991\n",
      "622.34 ms in get_probes(4)\n",
      " 24.99 s in load_gse( series_id platform_id..., 3991, False)\n",
      "  4.66 s in get_gene_fold_change(<Gse GSE25462>, False, 0, None)\n",
      "Loading data for GSE25724, id = 4042\n",
      "386.42 ms in get_probes(2)\n",
      "  4.49 s in load_gse( series_id platform_id..., 4042, False)\n",
      "  1.46 s in get_gene_fold_change(<Gse GSE25724>, False, 0, None)\n",
      "Loading data for GSE26887, id = 4348\n",
      "404.95 ms in get_probes(283)\n",
      "  8.31 s in load_gse( series_id platform_id..., 4348, False)\n",
      "  1.54 s in get_gene_fold_change(<Gse GSE26887>, False, 0, None)\n",
      "Loading data for GSE27949, id = 4577\n",
      "620.70 ms in get_probes(4)\n",
      " 22.79 s in load_gse( series_id platform_id..., 4577, False)\n",
      "  3.14 s in get_gene_fold_change(<Gse GSE27949>, False, 0, None)\n",
      "Loading data for GSE29221, id = 4919\n",
      "488.57 ms in get_probes(389)\n",
      " 14.63 s in load_gse( series_id platform_id..., 4919, False)\n",
      "  2.35 s in get_gene_fold_change(<Gse GSE29221>, False, 0, None)\n",
      "Loading data for GSE29226, id = 4921\n",
      "510.62 ms in get_probes(389)\n",
      " 15.18 s in load_gse( series_id platform_id..., 4921, False)\n",
      "  2.38 s in get_gene_fold_change(<Gse GSE29226>, False, 0, None)\n",
      "Loading data for GSE29231, id = 4922\n",
      "486.68 ms in get_probes(389)\n",
      " 14.96 s in load_gse( series_id platform_id..., 4922, False)\n",
      "  2.37 s in get_gene_fold_change(<Gse GSE29231>, False, 0, None)\n",
      "Loading data for GSE38396, id = 7091\n",
      "622.50 ms in get_probes(4)\n",
      "  9.03 s in load_gse( series_id platform_id..., 7091, False)\n",
      "  2.26 s in get_gene_fold_change(<Gse GSE38396>, False, 0, None)\n",
      "Loading data for GSE38642, id = 7132\n",
      "406.77 ms in get_probes(283)\n",
      "  9.89 s in load_gse( series_id platform_id..., 7132, False)\n",
      "  2.85 s in get_gene_fold_change(<Gse GSE38642>, False, 0, None)\n",
      "Loading data for GSE40234, id = 7508\n",
      "634.00 ms in get_probes(53)\n",
      " 28.07 s in load_gse( series_id platform_id..., 7508, False)\n",
      "  3.90 s in get_gene_fold_change(<Gse GSE40234>, False, 0, None)\n",
      "Loading data for GSE50397, id = 9552\n",
      "414.24 ms in get_probes(283)\n",
      " 24.14 s in load_gse( series_id platform_id..., 9552, False)\n",
      "  3.70 s in get_gene_fold_change(<Gse GSE50397>, False, 0, None)\n",
      "Loading data for GSE6798, id = 11053\n",
      "620.37 ms in get_probes(4)\n",
      " 20.94 s in load_gse( series_id platform_id..., 11053, False)\n",
      "  3.54 s in get_gene_fold_change(<Gse GSE6798>, False, 0, None)\n",
      "Loading data for GSE9006, id = 11628\n",
      "387.06 ms in get_probes(2)\n",
      "334.37 ms in get_probes(50)\n",
      " 43.65 s in load_gse( series_id platform_id..., 11628, False)\n",
      "  3.51 s in get_gene_fold_change(<Gse GSE9006>, False, 0, None)\n",
      "503.70 s in Load/fold for DOID_9352\n",
      "Meta-Analyzing DOID_9352\n",
      "476.91 s in meta analysis of real data for DOID_9352\n",
      "  1.93 s in meta analysis of permutations for DOID_9352\n",
      "108.96 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "479.44 s in Meta analysis for DOID_9352\n",
      "DONE DOID_9352 analysis\n",
      "984.21 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9352 type 2 diabetes mellitus\n",
      "63"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9744 analysis\n",
      "  1.27 s in get_analysis_df(\"T1D == 'T1D'\", \"T1D_control == 'T1D_c..., '')\n",
      "  1.28 s in Loading dataframe for DOID_9744\n",
      "Matching sources: 13\n",
      "Excluded 3 sources as single-class\n",
      "Stats: 10 sources, 8 series, 6 platforms, 416 samples\n",
      "Loading data and calculating fold change for DOID_9744\n",
      "Loading data for GSE10586, id = 157\n",
      "650.84 ms in get_probes(4)\n",
      " 17.91 s in load_gse( series_id platform_id..., 157, False)\n",
      "  3.43 s in get_gene_fold_change(<Gse GSE10586>, False, 0, None)\n",
      "Loading data for GSE11907, id = 488\n",
      "387.05 ms in get_probes(2)\n",
      "341.26 ms in get_probes(50)\n",
      " 95.77 s in load_gse( series_id platform_id..., 488, False)\n",
      "  2.51 s in get_gene_fold_change(<Gse GSE11907>, False, 0, None)\n",
      "Loading data for GSE14368, id = 1122\n",
      "422.50 ms in get_probes(331)\n",
      "  5.16 s in load_gse( series_id platform_id..., 1122, False)\n",
      "  1.51 s in get_gene_fold_change(<Gse GSE14368>, False, 0, None)\n",
      "Loading data for GSE24147, id = 3647\n",
      "619.02 ms in get_probes(4)\n",
      " 28.71 s in load_gse( series_id platform_id..., 3647, False)\n",
      "  4.19 s in get_gene_fold_change(<Gse GSE24147>, False, 0, None)\n",
      "Loading data for GSE29142, id = 4902\n",
      "455.26 ms in get_probes(937)\n",
      " 11.17 s in load_gse( series_id platform_id..., 4902, False)\n",
      "  2.01 s in get_gene_fold_change(<Gse GSE29142>, False, 0, None)\n",
      "Loading data for GSE3447, id = 6176\n",
      "114.41 ms in get_probes(654)\n",
      "  2.49 s in load_gse( series_id platform_id..., 6176, False)\n",
      "379.35 ms in get_gene_fold_change(<Gse GSE3447>, False, 0, None)\n",
      "Loading data for GSE55098, id = 10293\n",
      "616.36 ms in get_probes(4)\n",
      " 14.53 s in load_gse( series_id platform_id..., 10293, False)\n",
      "  3.07 s in get_gene_fold_change(<Gse GSE55098>, False, 0, None)\n",
      "Loading data for GSE9006, id = 11628\n",
      "386.35 ms in get_probes(2)\n",
      "333.29 ms in get_probes(50)\n",
      " 43.06 s in load_gse( series_id platform_id..., 11628, False)\n",
      "  6.98 s in get_gene_fold_change(<Gse GSE9006>, False, 0, None)\n",
      "245.71 s in Load/fold for DOID_9744\n",
      "Meta-Analyzing DOID_9744\n",
      "413.09 s in meta analysis of real data for DOID_9744\n",
      "665.44 ms in meta analysis of permutations for DOID_9744\n",
      "109.91 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "414.34 s in Meta analysis for DOID_9744\n",
      "DONE DOID_9744 analysis\n",
      "661.53 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9744 type 1 diabetes mellitus\n",
      "64"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_986 analysis\n",
      "812.39 ms in get_analysis_df(\"alopecia_areata == 'a..., \"alopecia_areata_contr..., '')\n",
      "816.68 ms in Loading dataframe for DOID_986\n",
      "Matching sources: 2\n",
      "Stats: 2 sources, 2 series, 1 platforms, 17 samples\n",
      "Loading data and calculating fold change for DOID_986\n",
      "Loading data for GSE45512, id = 8684\n",
      "628.17 ms in get_probes(4)\n",
      " 10.47 s in load_gse( series_id platform_id..., 8684, False)\n",
      "  2.43 s in get_gene_fold_change(<Gse GSE45512>, False, 0, None)\n",
      "Loading data for GSE58573, id = 10697\n",
      "621.48 ms in get_probes(4)\n",
      "  8.49 s in load_gse( series_id platform_id..., 10697, False)\n",
      "  2.23 s in get_gene_fold_change(<Gse GSE58573>, False, 0, None)\n",
      " 24.13 s in Load/fold for DOID_986\n",
      "Meta-Analyzing DOID_986\n",
      "351.41 s in meta analysis of real data for DOID_986\n",
      "238.83 ms in meta analysis of permutations for DOID_986\n",
      "108.96 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper I..., Empty DataFrame Column...)\n",
      "352.32 s in Meta analysis for DOID_986\n",
      "DONE DOID_986 analysis\n",
      "377.42 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:986 alopecia areata\n",
      "65"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Started DOID_9970 analysis\n",
      "994.06 ms in get_analysis_df(\"obesity == 'obesity'\", \"obesity_control == 'o..., '')\n",
      "998.34 ms in Loading dataframe for DOID_9970\n",
      "Matching sources: 43\n",
      "Excluded 23 sources as single-class\n",
      "Stats: 20 sources, 14 series, 16 platforms, 561 samples\n",
      "Loading data and calculating fold change for DOID_9970\n",
      "Loading data for GSE12050, id = 521\n",
      "666.94 ms in get_probes(332)\n",
      " 12.78 s in load_gse( series_id platform_id..., 521, False)\n",
      "  2.55 s in get_gene_fold_change(<Gse GSE12050>, False, 0, None)\n",
      "Loading data for GSE15524, id = 1461\n",
      "343.06 ms in get_probes(500)\n",
      "  7.89 s in load_gse( series_id platform_id..., 1461, False)\n",
      "  1.59 s in get_gene_fold_change(<Gse GSE15524>, False, 0, None)\n",
      "Loading data for GSE2508, id = 3892\n",
      "288.37 ms in get_probes(7)\n",
      "290.41 ms in get_probes(8)\n",
      "256.84 ms in get_probes(13)\n",
      "220.59 ms in get_probes(14)\n",
      "198.40 ms in get_probes(15)\n",
      "246.18 ms in get_probes(16)\n",
      " 26.13 s in load_gse( series_id platform_id..., 3892, False)\n",
      "  4.95 s in get_gene_fold_change(<Gse GSE2508>, False, 0, None)\n",
      "Loading data for GSE2510, id = 3901\n",
      "385.81 ms in get_probes(2)\n",
      "332.64 ms in get_probes(50)\n",
      " 13.67 s in load_gse( series_id platform_id..., 3901, False)\n",
      "  3.10 s in get_gene_fold_change(<Gse GSE2510>, False, 0, None)\n",
      "Loading data for GSE25401, id = 3977\n",
      "417.56 ms in get_probes(283)\n",
      " 16.91 s in load_gse( series_id platform_id..., 3977, False)\n",
      "  2.81 s in get_gene_fold_change(<Gse GSE25401>, False, 0, None)\n",
      "Loading data for GSE32575, id = 5751\n",
      "428.92 ms in get_probes(17)\n",
      " 24.69 s in load_gse( series_id platform_id..., 5751, False)\n",
      "  2.81 s in get_gene_fold_change(<Gse GSE32575>, False, 0, None)\n",
      "Loading data for GSE44000, id = 8392\n",
      "508.39 ms in get_probes(53)\n",
      "  5.55 s in load_gse( series_id platform_id..., 8392, False)\n",
      "  2.06 s in get_gene_fold_change(<Gse GSE44000>, False, 0, None)\n",
      "Loading data for GSE474, id = 9041\n",
      "389.45 ms in get_probes(2)\n",
      "  7.29 s in load_gse( series_id platform_id..., 9041, False)\n",
      "  1.70 s in get_gene_fold_change(<Gse GSE474>, False, 0, None)\n",
      "Loading data for GSE48452, id = 9252\n",
      "408.38 ms in get_probes(953)\n",
      " 29.44 s in load_gse( series_id platform_id..., 9252, False)\n",
      "  2.39 s in get_gene_fold_change(<Gse GSE48452>, False, 0, None)\n",
      "Loading data for GSE48521, id = 9261\n",
      "619.21 ms in get_probes(4)\n",
      " 14.22 s in load_gse( series_id platform_id..., 9261, False)\n",
      "  2.74 s in get_gene_fold_change(<Gse GSE48521>, False, 0, None)\n",
      "Loading data for GSE48964, id = 9327\n",
      "405.64 ms in get_probes(283)\n",
      "  5.02 s in load_gse( series_id platform_id..., 9327, False)\n",
      "  1.41 s in get_gene_fold_change(<Gse GSE48964>, False, 0, None)\n",
      "Loading data for GSE55205, id = 10304\n",
      "511.66 ms in get_probes(674)\n",
      "  6.59 s in load_gse( series_id platform_id..., 10304, False)\n",
      "  2.30 s in get_gene_fold_change(<Gse GSE55205>, False, 0, None)\n",
      "Loading data for GSE60403, id = 10836\n",
      "616.73 ms in get_probes(4)\n",
      " 13.90 s in load_gse( series_id platform_id..., 10836, False)\n",
      "  2.74 s in get_gene_fold_change(<Gse GSE60403>, False, 0, None)\n",
      "Loading data for GSE9624, id = 11780\n",
      "617.37 ms in get_probes(4)\n",
      " 10.42 s in load_gse( series_id platform_id..., 11780, False)\n",
      "  2.05 s in get_gene_fold_change(<Gse GSE9624>, False, 0, None)\n",
      "234.78 s in Load/fold for DOID_9970\n",
      "Meta-Analyzing DOID_9970\n",
      "456.90 s in meta analysis of real data for DOID_9970\n",
      "  1.30 s in meta analysis of permutations for DOID_9970\n",
      "107.05 mks in get_balanced_permutations({'analysis_name': 'DOI...,  C H H_lower H_upper \\..., Empty DataFrame Column...)\n",
      "458.79 s in Meta analysis for DOID_9970\n",
      "DONE DOID_9970 analysis\n",
      "694.83 s in perform_analysis({'analysis_name': 'DOI...)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " DOID:9970 obesity\n"
     ]
    }
   ],
   "source": [
    "errors = list()\n",
    "\n",
    "for i, row in query_df.iterrows():\n",
    "    print i, row.slim_id, row.slim_name\n",
    "\n",
    "    name = row.slim_id.replace(':', '_')\n",
    "    params = easydict.EasyDict(\n",
    "        analysis_name = name,\n",
    "        case_query = row.case_query,\n",
    "        control_query = row.control_query,\n",
    "        modifier_query = '',\n",
    "        min_samples = 3,\n",
    "    )\n",
    "    \n",
    "    directory = os.path.join('data', 'doslim', params.analysis_name)\n",
    "    if not os.path.isdir(directory):\n",
    "        os.mkdir(directory)\n",
    "\n",
    "    logfile = logging.FileHandler(os.path.join(directory, 'log.txt'))\n",
    "    logfile.setLevel(logging.DEBUG)\n",
    "    starapi.analysis.logger.addHandler(logfile)\n",
    "    try:\n",
    "        sample_df, fold_df, balanced_perm_df, perm_df = starapi.analysis.perform_analysis(params)\n",
    "        for df in fold_df, balanced_perm_df:\n",
    "            if df is not None:\n",
    "                df.reset_index(inplace=True)\n",
    "        \n",
    "    except Exception as e:\n",
    "        sample_df, fold_df, balanced_perm_df, perm_df = None, None, None, None\n",
    "        errors.append({'slim_id': row.slim_id, 'name': name, 'error': e})\n",
    "        print(e)\n",
    "    starapi.analysis.logger.removeHandler(logfile)\n",
    "    \n",
    "    # write files\n",
    "    files = [\n",
    "        (sample_df, 'samples.tsv', open),\n",
    "        (fold_df, 'fold_change.tsv.gz', gzip.open),\n",
    "        (balanced_perm_df, 'balanced_permutation.tsv.gz', gzip.open),\n",
    "    ]\n",
    "    for df, filename, opener in files:\n",
    "        if df is None:\n",
    "            continue\n",
    "        path = os.path.join(directory, filename)\n",
    "        with opener(path, 'wt') as write_file:\n",
    "            df.to_csv(write_file, index=False, sep='\\t', float_format='%.5g')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "Empty DataFrame\n",
       "Columns: []\n",
       "Index: []"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "path = 'data/errors.csv'\n",
    "if error_df.empty:\n",
    "    if os.path.exists(path):\n",
    "        os.remove(path)\n",
    "else:\n",
    "    error_df = pandas.DataFrame(errors)\n",
    "    error_df = query_df.merge(error_df)\n",
    "    error_df.to_csv(path, index=False)\n",
    "\n",
    "error_df"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 2 - stargeo",
   "language": "python",
   "name": "stargeo"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 2
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython2",
   "version": "2.7.10"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 0
}