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Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing

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dhimmel/integrate

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Creating a heterogeneous network for drug repurposing

DOI

This repository creates our heterogeneous network for repurposing drugs. The underlying databases are processed elsewhere but integrated here. Below the network is visualized:

Components:

  • integrate.ipynb: the python notebook for creating and populating the network. The network is built using the hetio package for heterogeneous networks.

  • data: the directory containing saved versions of the network. graph.json.gz is the preferred complete-network file.

  • data/summary: the directory with tables of network statistics. See the summaries of metanodes and metaedges.

  • viz: the directory containing network visualizations. Includes a wholistic network view as well as node degree distributions.