diff --git a/licenses/README.md b/licenses/README.md index 5a83c86..1c3d66e 100644 --- a/licenses/README.md +++ b/licenses/README.md @@ -2,35 +2,44 @@ The following table provides the licenses for resources contributing nodes or edges to the network. `Source` indicates the date when and location where the license information was retrieved. Blank values indicate no licensing information was found. `Institution` indicates where the resource was created. `Funder` indicates who funded the project and links to the source of the funding information. -| Resource | License | Source | Institution | Funder | -| -------- | ------- | ------ | ----------- | ------- | -| Disease Ontology | [CC BY 3.0](https://creativecommons.org/licenses/by/3.0/) | [2015-08-20](http://disease-ontology.org/resources/) | University of Maryland | [NIH, EMBL, DOE](https://doi.org/10.1093/nar/gku1011) | -| DrugBank 4.2 | [custom](custom/DrugBank.md) | [2015-08-20](http://www.drugbank.ca/) | University of Alberta | [CIHR, AIHS, TIMC](http://www.drugbank.ca/about) | -| Entrez Gene | [custom](custom/NCBI.md) | [2015-08-31](http://www.ncbi.nlm.nih.gov/home/about/policies.shtml) | NCBI | USFG | -| Uberon | [CC BY 3.0](http://creativecommons.org/licenses/by/3.0/) | [2015-08-30](https://github.com/obophenotype/uberon/issues/1139#issuecomment-136204582) | LBNL, OHSU | [NIH, NSF](http://obofoundry.org/ontology/uberon.html) | -| MeSH | [custom](custom/MeSH.md) | [2015-08-21](https://www.nlm.nih.gov/mesh/termscon.html) | NCBI | USFG | -| WikiPathways | [CC BY 3.0](https://creativecommons.org/licenses/by/3.0/) / [custom](custom/WikiPathways.md) | [2015-08-20](http://www.wikipathways.org/index.php/WikiPathways:License_Terms) | Gladstone Institutes, Maastricht University | [NIH](http://grantome.com/grant/NIH/R01-GM100039-04) | -| MSigDB | [custom](custom/MSigDB.asciidoc) | [2015-08-20](http://www.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/licenses/gsea_msigdb_license.txt) | Broad Institute | [NIH](http://grantome.com/grant/NIH/R01-CA121941-09) | -| Gene Ontology | [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/legalcode) | [2015-08-21](http://geneontology.org/page/use-and-license) | Gene Ontology Consortium | [NHGRI](http://geneontology.org/faq/who-funds-go) | -| GWAS Catalog | [custom](custom/EBI.md) | [2015-09-17](http://www.ebi.ac.uk/about/terms-of-use) | EBI | [NHGRI](https://www.ebi.ac.uk/gwas/docs/about) | -| DOAF | | | Northwestern University| [NIH](https://doi.org/10.1371/journal.pone.0049686) | -| DISEASES | [CC BY 4.0](http://creativecommons.org/licenses/by/4.0/) | [2015-08-21](http://diseases.jensenlab.org/Downloads) | University of Copenhagen | [Novo Nordisk Foundation Center, EU's FP7](https://doi.org/10.1016/j.ymeth.2014.11.020) | -| DisGeNET | [ODbL](http://opendatacommons.org/licenses/odbl/) | [2015-08-21](http://www.disgenet.org/web/DisGeNET/menu) | Universitat Pompeu Fabra | [ISCIII, IMI, EU's FP7, EFPIA](https:doi.org/10.1093/database/bav028) | -| ADEPTUS | | | Tel Aviv University | [Israel Science Foundation, Azrieli Foundation, I-CORE](https://doi.org/10.1093/nar/gkv810) | -| STARGEO | | | UCSF | | -| MEDLINE | [custom](custom/MEDLINE.md) | [2015-08-21](http://www.nlm.nih.gov/databases/journal.html) | NLM | USFG | -| Bgee | | | University of Lausanne & Swiss Institute of Bioinformatics | [Etat de Vaud, SIB](https://doi.org/10.1007/978-3-540-69828-9_12) | -| TISSUES | [CC BY 4.0](http://creativecommons.org/licenses/by/4.0/) | [2015-08-21](http://tissues.jensenlab.org/Downloads) | University of Copenhagen | [Novo Nordisk Foundation, NIH, CSIRO](https://doi.org/10.7717/peerj.1054) | -| BindingDB | [mixed](custom/BingindDB.md) CC BY 3.0 & CC BY-SA 3.0 | [2015-08-21](https://www.bindingdb.org/bind/info.jsp) | BindingDB | [NIH](http://grantome.com/grant/NIH/R01-GM070064-12) | -| hetio-dag | | | UCSF | NSF | -| Human Interactome Database | | | Harvard CCSB | [NHGRI, NCI, NSF, DFCI, Ellison Foundation, W. M. Keck Foundation](http://interactome.dfci.harvard.edu/) -| Incomplete Interactome | | | Northeastern University, DFCI | [NIH, NHGRI, NHLBI](https://doi.org/10.1126/science.1257601) | -| Evolutionary Rate Covariation | | | University of Pittsburgh | [Pittsburgh Foundation, PA Department of Health, NIH, NSF](https://doi.org/10.1371/journal.pgen.1004967) | -| MEDI | [CC BY-NC-SA 3.0](http://creativecommons.org/licenses/by-nc-sa/3.0/deed.en_US) | [2015-08-21](http://knowledgemap.mc.vanderbilt.edu/research/content/MEDI) | Vanderbilt University | [NIH](https://doi.org/10.1136/amiajnl-2012-001431) | -| ehrlink | | | UTHealth | [ONC SHARP, NIH](https://doi.org/10.1136/amiajnl-2012-000852) | -| LabeledIn | [custom](custom/LabeledIn.txt) | [2015-08-21](http://ftp.ncbi.nlm.nih.gov/pub/lu/LabeledIn/README.txt) | NCBI | USFG | -| PREDICT | [CC BY-NC-SA 3.0](http://creativecommons.org/licenses/by-nc-sa/3.0/) | [2015-08-21](http://msb.embopress.org/content/7/1/496) | Tel‐Aviv University | [Israel Science Foundation](https://doi.org/10.1038/msb.2011.26) | -| LINCS L1000 | [custom](custom/L1000.md) | [2015-10-16](http://www.lincscloud.org/license/) | Broad Institute | NIH | -| SIDER 4 | [CC BY-NC-SA 4.0](http://creativecommons.org/licenses/by-nc-sa/4.0/) | [2015-08-21](http://sideeffects.embl.de/download/) | EMBL | [Novo Nordisk Foundation, EMBL](https://doi.org/10.1093/nar/gkv1075) | +Resources are classified into four categories (denoted by ∈): -This table was manually compiled by @dhimmel and may contain inaccuracies or omissions. +1. Resources that are in the **public domain**. +2. Resources with a license that **allows** use, redistribution, and modification. +3. Resources with a license that **forbids** use, redistribution, or modification. +4. Resources that **do not have** a license. + +The table is sorted by category, then license leniency, then alphabetical order. + +| ∈ | Resource | License | Source | Institution | Funder | +| --- | -------- | ------- | ------ | ----------- | ------ | +| 1 | Entrez Gene | [custom](custom/NCBI.md) | [2015-08-31](http://www.ncbi.nlm.nih.gov/home/about/policies.shtml) | NCBI | USFG | +| 1 | MEDLINE | [custom](custom/MEDLINE.md) | [2015-08-21](http://www.nlm.nih.gov/databases/journal.html) | NLM | USFG | +| 1 | LabeledIn | [custom](custom/LabeledIn.txt) | [2015-08-21](http://ftp.ncbi.nlm.nih.gov/pub/lu/LabeledIn/README.txt) | NCBI | USFG | +| 1 | MeSH | [custom](custom/MeSH.md) | [2015-08-21](https://www.nlm.nih.gov/mesh/termscon.html) | NCBI | USFG | +| 2 | Disease Ontology | [CC BY 3.0](https://creativecommons.org/licenses/by/3.0/) | [2015-08-20](http://disease-ontology.org/resources/) | University of Maryland | [NIH, EMBL, DOE](https://doi.org/10.1093/nar/gku1011) | +| 2 | DISEASES | [CC BY 4.0](http://creativecommons.org/licenses/by/4.0/) | [2015-08-21](http://diseases.jensenlab.org/Downloads) | University of Copenhagen | [Novo Nordisk Foundation Center, EU's FP7](https://doi.org/10.1016/j.ymeth.2014.11.020) | +| 2 | Gene Ontology | [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/legalcode) | [2015-08-21](http://geneontology.org/page/use-and-license) | Gene Ontology Consortium | [NHGRI](http://geneontology.org/faq/who-funds-go) | +| 2 | GWAS Catalog | [custom](custom/EBI.md) | [2015-09-17](http://www.ebi.ac.uk/about/terms-of-use) | EBI | [NHGRI](https://www.ebi.ac.uk/gwas/docs/about) | +| 2 | LINCS L1000 | [custom](custom/L1000.md) | [2015-10-16](http://www.lincscloud.org/license/) | Broad Institute | NIH | +| 2 | TISSUES | [CC BY 4.0](http://creativecommons.org/licenses/by/4.0/) | [2015-08-21](http://tissues.jensenlab.org/Downloads) | University of Copenhagen | [Novo Nordisk Foundation, NIH, CSIRO](https://doi.org/10.7717/peerj.1054) | +| 2 | Uberon | [CC BY 3.0](http://creativecommons.org/licenses/by/3.0/) | [2015-08-30](https://github.com/obophenotype/uberon/issues/1139#issuecomment-136204582) | LBNL, OHSU | [NIH, NSF](http://obofoundry.org/ontology/uberon.html) | +| 2 | WikiPathways | [CC BY 3.0](https://creativecommons.org/licenses/by/3.0/) / [custom](custom/WikiPathways.md) | [2015-08-20](http://www.wikipathways.org/index.php/WikiPathways:License_Terms) | Gladstone Institutes, Maastricht University | [NIH](http://grantome.com/grant/NIH/R01-GM100039-04) | +| 2 | BindingDB | [mixed](custom/BingindDB.md) CC BY 3.0 & CC BY-SA 3.0 | [2015-08-21](https://www.bindingdb.org/bind/info.jsp) | BindingDB | [NIH](http://grantome.com/grant/NIH/R01-GM070064-12) | +| 2 | DisGeNET | [ODbL](http://opendatacommons.org/licenses/odbl/) | [2015-08-21](http://www.disgenet.org/web/DisGeNET/menu) | Universitat Pompeu Fabra | [ISCIII, IMI, EU's FP7, EFPIA](https:doi.org/10.1093/database/bav028) | +| 2 | DrugBank 4.2 | [custom](custom/DrugBank.md) | [2015-08-20](http://www.drugbank.ca/) | University of Alberta | [CIHR, AIHS, TIMC](http://www.drugbank.ca/about) | +| 2 | MEDI | [CC BY-NC-SA 3.0](http://creativecommons.org/licenses/by-nc-sa/3.0/deed.en_US) | [2015-08-21](http://knowledgemap.mc.vanderbilt.edu/research/content/MEDI) | Vanderbilt University | [NIH](https://doi.org/10.1136/amiajnl-2012-001431) | +| 2 | PREDICT | [CC BY-NC-SA 3.0](http://creativecommons.org/licenses/by-nc-sa/3.0/) | [2015-08-21](http://msb.embopress.org/content/7/1/496) | Tel‐Aviv University | [Israel Science Foundation](https://doi.org/10.1038/msb.2011.26) | +| 2 | SIDER 4 | [CC BY-NC-SA 4.0](http://creativecommons.org/licenses/by-nc-sa/4.0/) | [2015-08-21](http://sideeffects.embl.de/download/) | EMBL | [Novo Nordisk Foundation, EMBL](https://doi.org/10.1093/nar/gkv1075) | +| 3 | MSigDB | [custom](custom/MSigDB.asciidoc) | [2015-08-20](http://www.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/licenses/gsea_msigdb_license.txt) | Broad Institute | [NIH](http://grantome.com/grant/NIH/R01-CA121941-09) | +| 4 | ADEPTUS | | | Tel Aviv University | [Israel Science Foundation, Azrieli Foundation, I-CORE](https://doi.org/10.1093/nar/gkv810) | +| 4 | Bgee | | | University of Lausanne & Swiss Institute of Bioinformatics | [Etat de Vaud, SIB](https://doi.org/10.1007/978-3-540-69828-9_12) | +| 4 | DOAF | | | Northwestern University| [NIH](https://doi.org/10.1371/journal.pone.0049686) | +| 4 | ehrlink | | | UTHealth | [ONC SHARP, NIH](https://doi.org/10.1136/amiajnl-2012-000852) | +| 4 | Evolutionary Rate Covariation | | | University of Pittsburgh | [Pittsburgh Foundation, PA Department of Health, NIH, NSF](https://doi.org/10.1371/journal.pgen.1004967) | +| 4 | hetio-dag | | | UCSF | NSF | +| 4 | Incomplete Interactome | | | Northeastern University, DFCI | [NIH, NHGRI, NHLBI](https://doi.org/10.1126/science.1257601) | +| 4 | Human Interactome Database | | | Harvard CCSB | [NHGRI, NCI, NSF, DFCI, Ellison Foundation, W. M. Keck Foundation](http://interactome.dfci.harvard.edu/) | +| 4 | STARGEO | | | UCSF | | + +This table was manually compiled by [@dhimmel](https://github.com/dhimmel "dhimmel on GitHub") and may contain inaccuracies or omissions. See the [corresponding _Thinklab_ discussion](https://doi.org/10.15363/thinklab.d107 "Integrating resources with disparate licensing into an open network") for more information on the legal issues surrounding our data integration.