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Self to self gene pairs in output data #2

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dhimmel opened this issue Mar 9, 2017 · 0 comments
Open

Self to self gene pairs in output data #2

dhimmel opened this issue Mar 9, 2017 · 0 comments

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@dhimmel
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dhimmel commented Mar 9, 2017

In the course of resolving hetio/hetnetpy#10, I discovered there is a two gene pairs are self-loops in erc_mam33-entrez-gt-0.6.tsv.gz (after filtering for correlation >= 0.75). See:

erc-self-loop

I don't think ERC with self makes sense (or it should be one)... so it'd make sense to remove these.

Also see #1 where duplicate gene pairs were identified.
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