.gitignore

## references are excluded
background_literature/
data/
pictures/
data
src/misc/vcftools/
circos.*
## system specific
.directory
.DS_Store

## R hidden files
*.Rhistory
*.RData
*.rdb
*.rdx

## Core latex/pdflatex auxiliary files:
*.aux
*.lof
*.log
*.lot
*.fls
*.out
*.toc
*.fmt
*.fot
*.cb
*.cb2

#Personal additions
*.jpg
*.jpeg
*.bed
#*.png
#*.docx
#*.xlsx
#*.tex
## Intermediate documents:
*.dvi
*-converted-to.*
# these rules might exclude image files for figures etc.
# *.ps
# *.eps
*.pdf
*.PDF
## Bibliography auxiliary files (bibtex/biblatex/biber):
*.bbl
*.bcf
*.blg
*-blx.aux
*-blx.bib
*.brf
*.run.xml
# Mac dir files
*.DS_Store
## Build tool auxiliary files:
*.fdb_latexmk
*.synctex
*.synctex.gz
*.synctex.gz(busy)
*.pdfsync

## Auxiliary and intermediate files from other packages:
# algorithms
*.alg
*.loa

# achemso
acs-*.bib

# amsthm
*.thm

# beamer
*.nav
*.snm
*.vrb

# cprotect
*.cpt

# fixme
*.lox

#(r)(e)ledmac/(r)(e)ledpar
*.end
*.?end
*.[1-9]
*.[1-9][0-9]
*.[1-9][0-9][0-9]
*.[1-9]R
*.[1-9][0-9]R
*.[1-9][0-9][0-9]R
*.eledsec[1-9]
*.eledsec[1-9]R
*.eledsec[1-9][0-9]
*.eledsec[1-9][0-9]R
*.eledsec[1-9][0-9][0-9]
*.eledsec[1-9][0-9][0-9]R

# glossaries
*.acn
*.acr
*.glg
*.glo
*.gls
*.glsdefs

# gnuplottex
*-gnuplottex-*

# hyperref
*.brf

# knitr
*-concordance.tex
# TODO Comment the next line if you want to keep your tikz graphics files
*.tikz
*-tikzDictionary

# listings
*.lol

# makeidx
*.idx
*.ilg
*.ind
*.ist

# minitoc
*.maf
*.mlf
*.mlt
*.mtc
*.mtc[0-9]
*.mtc[1-9][0-9]

# minted
_minted*
*.pyg

# morewrites
*.mw

# mylatexformat
*.fmt

# nomencl
*.nlo

# sagetex
*.sagetex.sage
*.sagetex.py
*.sagetex.scmd

# sympy
*.sout
*.sympy
sympy-plots-for-*.tex/

# pdfcomment
*.upa
*.upb

# pythontex
*.pytxcode
pythontex-files-*/

# thmtools
*.loe

# TikZ & PGF
*.dpth
*.md5
*.auxlock

# todonotes
*.tdo

# xindy
*.xdy

# xypic precompiled matrices
*.xyc

# endfloat
*.ttt
*.fff

# Latexian
TSWLatexianTemp*

## Editors:
# WinEdt
*.bak
*.sav

# Texpad
.texpadtmp

# Kile
*.backup

# KBibTeX
*~[0-9]*