{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":325856165,"defaultBranch":"master","name":"Mycelia","ownerLogin":"cjprybol","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-12-31T18:44:30.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3497642?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1698951982.0","currentOid":""},"activityList":{"items":[{"before":"9cdeb67bbca16169563f6c700fbe723a804c65c7","after":"91d718c535f1660528e1bca1cef1219c27f43b82","ref":"refs/heads/master","pushedAt":"2024-08-19T21:52:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add notebooks","shortMessageHtmlLink":"add notebooks"}},{"before":"d745d700c86290ee5fc0ccc350f1c2ae3b9cd18e","after":"9cdeb67bbca16169563f6c700fbe723a804c65c7","ref":"refs/heads/master","pushedAt":"2024-07-16T18:35:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Add updates","shortMessageHtmlLink":"Add updates"}},{"before":"86eb79fc83a8badbf371d10315a9ec3f1286224d","after":"d745d700c86290ee5fc0ccc350f1c2ae3b9cd18e","ref":"refs/heads/master","pushedAt":"2024-07-12T17:40:33.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"2834de90eb35744ec7b604bbbde40bc14b18b21c","after":"86eb79fc83a8badbf371d10315a9ec3f1286224d","ref":"refs/heads/master","pushedAt":"2024-07-11T18:21:44.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"014237379559e2db50c87d09fbc19dd3cce77983","after":"2834de90eb35744ec7b604bbbde40bc14b18b21c","ref":"refs/heads/master","pushedAt":"2024-07-08T20:35:15.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Adding parallel for loops to speed up some steps (#178)\n\n* Update 20240430.mycelia-fastq-polish-single-round.ipynb\r\n\r\ninclude parallel loops . use by declaring `julia --threads 48` or something like that before running julia\r\n\r\n* Update 20240430.mycelia-fastq-polish-single-round.ipynb\r\n\r\n* Update 20240430.mycelia-fastq-polish-single-round.ipynb\r\n\r\n* Revert \"Update 20240430.mycelia-fastq-polish-single-round.ipynb\"\r\n\r\nThis reverts commit 6de9eef42ba0053b8b1f1fe5ed9b64c47f304a2a.\r\n\r\n* Revert \"Update 20240430.mycelia-fastq-polish-single-round.ipynb\"\r\n\r\nThis reverts commit 5d79e7a4ad15b409cd51f1b0caf8819616938611.\r\n\r\n* Revert \"Update 20240430.mycelia-fastq-polish-single-round.ipynb\"\r\n\r\nThis reverts commit 9a4793bef71f8b9914273ff572dc9e02fe4840a5.\r\n\r\n* added parallel fastq polish notebook\r\n\r\n---------\r\n\r\nCo-authored-by: Jean Elbers ","shortMessageHtmlLink":"Adding parallel for loops to speed up some steps (#178)"}},{"before":"885b59bdbea527839a0f5d18b51fcd19bb211976","after":"014237379559e2db50c87d09fbc19dd3cce77983","ref":"refs/heads/master","pushedAt":"2024-07-05T21:08:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"update clustering code","shortMessageHtmlLink":"update clustering code"}},{"before":"0560dd74418ebeaa45249a37a1eb5f21730c1686","after":"885b59bdbea527839a0f5d18b51fcd19bb211976","ref":"refs/heads/master","pushedAt":"2024-07-01T13:42:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"fe587d6c413785389f9a08d25e621ccfd1b9e875","after":"0560dd74418ebeaa45249a37a1eb5f21730c1686","ref":"refs/heads/master","pushedAt":"2024-06-28T13:38:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Add pacbio sample name parsing from xml metadata","shortMessageHtmlLink":"Add pacbio sample name parsing from xml metadata"}},{"before":"fd2bfc1d66b355d4f56846122373bd0ed9224274","after":"fe587d6c413785389f9a08d25e621ccfd1b9e875","ref":"refs/heads/master","pushedAt":"2024-06-28T13:28:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"470c46842283ba68d78255fcb0f6035d8be8d402","after":"fd2bfc1d66b355d4f56846122373bd0ed9224274","ref":"refs/heads/master","pushedAt":"2024-06-27T18:45:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add fxn to read mmseqs easy search output","shortMessageHtmlLink":"add fxn to read mmseqs easy search output"}},{"before":"c98c864e29600276f70c37fe9e2c58847af6a277","after":"470c46842283ba68d78255fcb0f6035d8be8d402","ref":"refs/heads/master","pushedAt":"2024-06-07T20:38:19.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"0e695130b911267d0a3cd25179d2cfa197dd76b0","after":"c98c864e29600276f70c37fe9e2c58847af6a277","ref":"refs/heads/master","pushedAt":"2024-06-07T20:22:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Delete Snakefile","shortMessageHtmlLink":"Delete Snakefile"}},{"before":"1692f924889d80da4e796c3f4bd8b84888612144","after":"0e695130b911267d0a3cd25179d2cfa197dd76b0","ref":"refs/heads/master","pushedAt":"2024-06-07T20:22:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Delete CITATION.bib","shortMessageHtmlLink":"Delete CITATION.bib"}},{"before":"828eb07275e80c1a73d2f63914c6601bc3655e62","after":"1692f924889d80da4e796c3f4bd8b84888612144","ref":"refs/heads/master","pushedAt":"2024-06-07T19:41:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Add typed function call docstrings to all functions","shortMessageHtmlLink":"Add typed function call docstrings to all functions"}},{"before":"a4eb2460fb3e38f7badd92d9956d3505c88e25c1","after":"828eb07275e80c1a73d2f63914c6601bc3655e62","ref":"refs/heads/master","pushedAt":"2024-06-07T18:59:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}},{"before":"b80d70cceece1db1d96f772d0c2a74ee941ed2fe","after":"a4eb2460fb3e38f7badd92d9956d3505c88e25c1","ref":"refs/heads/master","pushedAt":"2024-06-07T13:46:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ca6c57dc8d4e280d0defdb8dcd1d4d1d05892121","after":"b80d70cceece1db1d96f772d0c2a74ee941ed2fe","ref":"refs/heads/master","pushedAt":"2024-06-01T01:21:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"1d87c15d422ce0eda17e0bcd2f90bd1afa8b3d5b","after":"ca6c57dc8d4e280d0defdb8dcd1d4d1d05892121","ref":"refs/heads/master","pushedAt":"2024-05-31T18:45:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"15681bb1c293431b417842ff84cd3ba9d38c4a17","after":"1d87c15d422ce0eda17e0bcd2f90bd1afa8b3d5b","ref":"refs/heads/master","pushedAt":"2024-05-24T22:02:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"6e1c37be4ecb4fe2d326e92dee3835c1be6183ea","after":"15681bb1c293431b417842ff84cd3ba9d38c4a17","ref":"refs/heads/master","pushedAt":"2024-05-22T16:26:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"59380ddf2fa8b34b2a6c13d454217718ccfd7c93","after":"6e1c37be4ecb4fe2d326e92dee3835c1be6183ea","ref":"refs/heads/master","pushedAt":"2024-05-14T02:32:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"7caa197964323bf8d4a571eec121602ed491ec76","after":"59380ddf2fa8b34b2a6c13d454217718ccfd7c93","ref":"refs/heads/master","pushedAt":"2024-05-13T13:28:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"90e7597a8efd1ddfcef7b73d089c11b7a6d7be31","after":"7caa197964323bf8d4a571eec121602ed491ec76","ref":"refs/heads/master","pushedAt":"2024-05-09T15:47:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add updates","shortMessageHtmlLink":"add updates"}},{"before":"33a1d3769f5bb0cb1b9131422625b584131cb6b1","after":"90e7597a8efd1ddfcef7b73d089c11b7a6d7be31","ref":"refs/heads/master","pushedAt":"2024-05-09T01:48:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"add progress","shortMessageHtmlLink":"add progress"}},{"before":"9cb2c2586cab7b4e7a1581e30b8e7c4ad12b2c71","after":"33a1d3769f5bb0cb1b9131422625b584131cb6b1","ref":"refs/heads/master","pushedAt":"2024-05-05T13:54:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"initial figures","shortMessageHtmlLink":"initial figures"}},{"before":"3f8b82b0c8390efb926660f2841fcc683432d06a","after":"9cb2c2586cab7b4e7a1581e30b8e7c4ad12b2c71","ref":"refs/heads/master","pushedAt":"2024-05-05T02:24:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"end-to-end variant calling precision recall","shortMessageHtmlLink":"end-to-end variant calling precision recall"}},{"before":"06eb54b26ca9592aba892933b8f27686f7339ba2","after":"3f8b82b0c8390efb926660f2841fcc683432d06a","ref":"refs/heads/master","pushedAt":"2024-05-05T00:47:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"progress","shortMessageHtmlLink":"progress"}},{"before":"5f53562da1e238ad91ed63b8c1bc3fd2bc0f6696","after":"06eb54b26ca9592aba892933b8f27686f7339ba2","ref":"refs/heads/master","pushedAt":"2024-05-03T23:21:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"done with assemblies","shortMessageHtmlLink":"done with assemblies"}},{"before":"558c79d4ee28c50f3f00879aead117b2b19b0bd1","after":"5f53562da1e238ad91ed63b8c1bc3fd2bc0f6696","ref":"refs/heads/master","pushedAt":"2024-05-03T13:55:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"finishing up assembly quality evaluation","shortMessageHtmlLink":"finishing up assembly quality evaluation"}},{"before":"20f79febce20614f7322eb4fbd699584f20592d5","after":"558c79d4ee28c50f3f00879aead117b2b19b0bd1","ref":"refs/heads/master","pushedAt":"2024-05-02T16:37:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cjprybol","name":null,"path":"/cjprybol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3497642?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:cjprybol/Mycelia","shortMessageHtmlLink":"Merge branch 'master' of github.com:cjprybol/Mycelia"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEnnp9vgA","startCursor":null,"endCursor":null}},"title":"Activity ยท cjprybol/Mycelia"}