Stars
System for building cross-distribution Linux binaries
Dockerfile for the Database Datomic Free Edition
dwm-inpsired tiling pane management for tmux
A wrapper around datomic-free to easily start and upgrade it
Pipeline for structural variant image curation and analysis.
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Dockerfiles to build Biopython instances
Curated collection of open-source bioinformatics tools
A tiny package manager for crucial unix and bioinformatics tools
variant integration methods for the 1000 Genomes Project
A comprehensive pipeline to analyze and visualize structural variants
Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting to plink format and filtering steps
Docker containers that demonstrate a proof of concept bwa alignment workflow
A small set of test cases for long-read assembly tools
A command line tool for provisioning and interacting with VMs.
liftover version of the gatk resource bundle for the new assembling GRCH38 (primary assembling, no alt contigs or decoy sequences).
Materials & Methods for CNV calling with Genalice software against a benchmark dataset
This project contains a set of scripts and config files I am using to configure CloudMan for MSI's private OpenStack cloud.
GoingViral is a pipeline for the analysis of SISPA generated viral metagonomics reads. It's a configurable pipeline that performs multiple functions to generate clean viral metagenomics reads that …
Repository to hold wrapper apps for bcbio CWL on DNAnexus