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Ginkgo Bioworks
- Boston, MA
- https://bcb.io
- https://spore.social/@chapmanb
- @chapmanb
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Production-Grade Container Scheduling and Management
Packer is a tool for creating identical machine images for multiple platforms from a single source configuration.
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
a high-performance, POSIX-ish Amazon S3 file system written in Go
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Fast, concurrent, streaming access to Amazon S3, including gof3r, a CLI. https://godoc.org/github.com/rlmcpherson/s3gof3r
Robust, flexible and resource-efficient pipelines using Go and the commandline
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
An open source platform for managing and analyzing biomedical big data
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
structural variant calling and genotyping with existing tools, but, smoothly.
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Lollipop-style mutation diagrams for annotating genetic variations.
workflow and resource management system for bioinformatics data analysis
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
A package for simulating RNA-seq library preparation with parameter estimation