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transformato

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Transformato is a package that helps to set up relative alchemical free energy calculations of small molecules with a common core scaffold, either for relative solvation free energy1, absolute solvation free energy2 or binding free energy3 estimates. The package is designed to be used with output generated by CHARMM-GUI.

Installation

transformato can be easily installed from conda-forge:

conda install transformato -c conda-forge

Usage

For more information on how to use transformato please visit the documentation

Maintainers

Copyright

©️ 2024, Marcus Wieder, Johannes Karwounopoulos, Stefan Boresch

Acknowledgements

Project based on the Computational Molecular Science Python Cookiecutter version 1.1.

Footnotes

  1. Wieder, M., Fleck, M., Braunsfeld, B., Boresch, S., J. Comput. Chem. 2022, 1. DOI

  2. Karwounopoulos, J.,Kaupang, A., Wieder, M., Boresch, S., JCTC 2023, 9, 954638 DOI

  3. Karwounopoulos, J., Wieder, M., Boresch, S., Front. Mol. Biosci. 2022, 9, 954638 DOI