Commits

Commits on May 2, 2024

Merge remote-tracking branch 'upstream/devel' into devel
mass-a
committedMay 2, 2024

Commits on Apr 30, 2024

bump x.y.z version to odd y following creation of RELEASE_3_19 branch
jwokaty
committedApr 30, 2024
bump x.y.z version to even y prior to creation of RELEASE_3_19 branch
jwokaty
committedApr 30, 2024

Commits on Apr 23, 2024

Add BioC shields to Readme
mass-a
committedApr 23, 2024

Commits on Mar 6, 2024

Fix badly formatted NEWS file
mass-a
committedMar 6, 2024

Commits on Mar 1, 2024

Update README.md
mass-a
committedMar 1, 2024
Add news, bump version
mass-a
committedMar 1, 2024
correct variable name
mass-a
committedMar 1, 2024
Improve documentation
mass-a
committedMar 1, 2024
Fix normalization factor for U
mass-a
committedMar 1, 2024

Commits on Feb 23, 2024

Include SeuratObject in Suggests
mass-a
committedFeb 23, 2024

Commits on Feb 21, 2024

Smaller test dataset; change default for chunk.size=100
mass-a
committedFeb 21, 2024

Commits on Dec 19, 2023

Update README.md
mass-a
committedDec 19, 2023

Commits on Nov 27, 2023

Work with Seurat objects with split layers
mass-a
committedNov 27, 2023

Commits on Nov 6, 2023

Fix example for SmoothKNN
mass-a
committedNov 6, 2023

Commits on Oct 25, 2023

Bump version
mass-a
committedOct 25, 2023
Compatibility with Seurat v5
mass-a
committedOct 25, 2023

Commits on Oct 24, 2023

bump x.y.z version to odd y following creation of RELEASE_3_18 branch
jwokaty
committedOct 24, 2023
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch
jwokaty
committedOct 24, 2023

Commits on Aug 30, 2023

Consistent defaults for decay parameter
mass-a
committedAug 30, 2023
Update implementation of SmoothKNN, to control exp decay of NN weights
mass-a
committedAug 30, 2023

Commits on Apr 25, 2023

bump x.y.z version to odd y following creation of RELEASE_3_17 branch
jwokaty
committedApr 25, 2023
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch
jwokaty
committedApr 25, 2023

Commits on Nov 21, 2022

Add stats to imports
mass-a
committedNov 21, 2022
Allow applying smoothing directly on gene expression data
mass-a
committedNov 21, 2022

Commits on Nov 18, 2022

Handle case of running UCell on 1 cell
mass-a
committedNov 18, 2022
Handle k < #cells in kNN smoothing
mass-a
committedNov 18, 2022

Commits on Nov 1, 2022

bump x.y.z version to odd y following creation of RELEASE_3_16 branch
jwokaty
committedNov 1, 2022
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch
jwokaty
committedNov 1, 2022

Commits on Oct 20, 2022

Add BPPARAM to SmoothKNN function (passed to BiocNeighbors)
mass-a
committedOct 20, 2022

Commits on Aug 23, 2022

Update README.md
sjcarmona
committedAug 23, 2022

Commits on Aug 19, 2022

Add files via upload
sjcarmona
committedAug 19, 2022

Commits on Aug 5, 2022

Add example of gene expression smoothing in vignette
mass-a
committedAug 5, 2022
lower resolution for figures
mass-a
committedAug 5, 2022
Use FALSE instead of F
mass-a
committedAug 5, 2022