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Mowgli does not detect GPU #10
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Hi @mdmanurung, could you try |
Thanks! It does solve the problem. |
Awesome! Feel free to reach out here or by email if you have more questions or if you have feedback on the tool :) Reopening the issue because the error is a bit cryptic, I should make the behavior clearer and add some warnings is CPU is selected |
Thanks! Out of curiosity, are you preparing for a version that can also handle batch correction? This would be very much needed... |
Not in the works for now I'm afraid... But you can always apply a batch correction method that works on counts before Mowgli. Or a batch correction method that works on embeddings (like harmony) after Mowgli. |
Dear authors,
Thank you for writing the package.
Prior to running mowgli, I have ensured that CUDA+GPU is detectable via torch.
![image](https://private-user-images.githubusercontent.com/10704760/301505430-b6eed96d-2155-4fa9-ae9d-99d344e07f4e.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.txxQNfooLn129XJxrCKMCwTfum690gni6FsqGqIbalI)
However, I got the following error message:
ValueError: Expected a cuda device, but got: cpu
This is the full error message
Do you have any suggestion to solve this? Thanks in advance.
Regards,
Mikhael
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