metawrap installation problems #534

bioinformaticsporter · 2024-01-16T10:41:29Z

Dear teacher：
I ran into some problems, first created python2.7 environment, tried bioconda and normal conda installation, and it didn't work, then cloned it from github.here is my running command.
git clone https://github.com/bxlab/metaWRAP.git
The result can be installed normally.

Then add it to the environment
PATH=/mnt/data/userdata/svip019/metawrap/metaWRAP/bin/:$PATH

Step 3: Add all of its dependencies, I choose to do neither, the command is as follows。
conda install biopython blas=2.5 blast=2.6.0 bmtagger bowtie2 bwa checkm-genome fastqc kraken=1.1 kraken=2.0 krona=2.7 matplotlib maxbin2 megahit metabat2 pandas prokka quast r-ggplot2 r-recommended salmon samtools=1.9 seaborn spades trim-galore
or
conda install --only-deps -c ursky metawrap-mg
However, there is no result, would like to ask you how to solve？

JipengLuo · 2024-01-26T16:31:14Z

It seems that you need to fix the channels in conda.

bioinformaticsporter · 2024-01-28T06:11:51Z

I added four download channels according to the process, but I still can’t download. What’s the problem?

bioinformaticsporter · 2024-01-28T06:16:10Z

In the past two days, I tried docker installation and it was completed. When downloading the database, I chose to download it from the National Microbial Science Data Center. The Blast-nt database downloaded a 200G compressed file, which did not match the description on the home page. Download the data from the kraken2 link. A total of 358G data compression package was downloaded, which does not match the description. I would like to ask you, what is the problem with this download process?
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