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cites-without-doi.bib
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@incollection{beer-2007,
author = {J. J. Beer},
year = {2007},
booktitle ={Columbia River Salmon Passage (CRiSP) Model Monitoring and Evaluating Support Annual Report, October 1, 2006 - September 30 2007},
title = {Appendix 7: Run Timing of Adult {Chinook} Salmon Passing {Bonneville Dam} on the {Columbia River}},
publisher = {U.S. Department of Energy, Bonneville Power Administration, Oregon Division of Fish and Wildlife},
address = {Portland, OR}
}
@Article{blair-etal-1993,
author = {G. R. Blair and D. E. Rogers and T. P. Quinn},
year = {1993},
journal = {Transactions of the American Fisheries Society},
title = {Variation in life history characteristics and morphology of sockeye salmon in the {Kvichak River} system, {Bristol Bay, Alaska}},
volume = {122},
issue = {4},
url = {https://www.tandfonline.com/doi/abs/10.1577/1548-8659%281993%29122%3C0550%3AVILHCA%3E2.3.CO%3B2},
}
@book{bolker-2008,
author={B. M. Bolker},
year={2008},
title={Ecological Models and Data in R},
publisher={Princeton University Press},
note={ISBN 978-0691125220},
url = {https://press.princeton.edu/titles/8709.html}
}
@techreport{bue-etal-2012,
author = {B. G. Bue and K. L. Schaberg and Z. W. Liller and D. B. Molyneaux},
year = {2012},
title = {Estimates of the Historic Run and Escapement for the {Chinook} Salmon Stock Returning to the {Kuskokwim River}, 1976-2011},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {12-49},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-49.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-49.pdf} [last accessed 2/20/2019]},
}
@techreport{schaberg-etal-2012,
author = {K. L. Schaberg and Z. W. Liller and D. B. Molyneaux and B. G. Bue and L. Stuby},
year = {2012},
title = {Estimates of total annual return of {Chinook} salmon to the {Kuskokwim River}, 2002--2007},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {12-36},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-36.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-36.pdf} [last accessed 2/20/2019]},
}
@techreport{bue-lipka-2016,
author = {D. G. Bue and C. G. Lipka},
year = {2016},
title = {Characterization of the 2011 salmon run in the {Kuskokwim River} based on the test fishery at {Bethel}},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {16-05},
address = {Anchorage, AK},
URL = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-05.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-05.pdf} [last accessed 2/20/2019]},
}
@inproceedings{clark-etal-2009,
author = {R. A. Clark and D. R. Bernard and S. J. Fleischman},
year = {2009},
title = {Stock-recruitment analysis for escapement goal development: {A} case study of {Pacific} salmon in {Alaska}},
booktitle = {Pacific Salmon: Ecology and Management of Western Alaska's Populations},
editor = {C. C. Krueger and C. E. Zimmerman},
series = {American Fisheries Society Symposium 70},
pages = {743--757},
publisher = {},
address = {Bethesda, MD}
}
@book{cooley-1963,
author = {R. A. Cooley},
year = {1963},
title = {Politics and Conservation: the Decline of the Alaska Salmon},
publisher = {Harper and Row},
}
@techreport{hamazaki-2011,
author = {T. Hamazaki},
year = {2011},
title = {Reconstruction of subsistence salmon harvests in the {Kuskokwim Area}, 1990 -- 2009},
institution = {Alaska Department of Fish and Game},
type = {Fishery Manuscript Series},
number = {11-09},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FMS11-09.pdf},
note = {Available at: http:https://www.adfg.alaska.gov/FedAidPDFs/FMS11-09.pdf [last accessed 2/20/2019]},
}
@techreport{carroll-hamazaki-2012,
author = {H. C. Carroll and T. Hamazaki},
year = {2012},
title = {Subsistence salmon harvests in the {Kuskokwim Area}, 2010},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {12-38},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-38.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS12-38.pdf} [last accessed 2/20/2019]},
}
@techreport{shelden-etal-2014,
author = {C. A. Shelden and T. Hamazaki and M. Horne-Brine and G. Roczicka and M. J. Thalhauser and H. C. Carroll},
year = {2014},
title = {Subsistence salmon harvests in the {Kuskokwim Area}, 2011 and 2012},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {14-20},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS14-20.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS14-20.pdf} [last accessed 2/20/2019]},
}
@techreport{shelden-etal-2015,
author = {C. A. Shelden and T. Hamazaki and M. Horne-Brine and R. Chavez and R. Frye},
year = {2015},
title = {Addendum edition: Subsistence salmon harvests in the {Kuskokwim Area}, 2013},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {15-22},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS15-22.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS15-22.pdf} [last accessed 2/20/2019]},
}
@techreport{shelden-etal-2016a,
author = {C. A. Shelden and T. Hamazaki and M. Horne-Brine and I. Dull and R. Frye},
year = {2016},
title = {Subsistence salmon harvests in the {Kuskokwim Area}, 2014},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {16-49},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-49.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-49.pdf} [last accessed 2/20/2019]},
}
@techreport{shelden-etal-2016b,
author = {C. A. Shelden and T. Hamazaki and M. Horne-Brine and G. Roczicka},
year = {2016},
title = {Subsistence salmon harvests in the {Kuskokwim Area}, 2015},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {16-55},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-55.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS16-55.pdf} [last accessed 2/20/2019]},
}
@techreport{hamazaki-etal-2012,
author = {T. Hamazaki and M. J. Evenson and S. J. Fleischman and K. L. Schaberg},
year = {2012},
title = {Spawner-Recruit Analysis and Escapement Goal Recommendation for {Chinook} Salmon in the {Kuskokwim River} Drainage},
institution = {Alaska Department of Fish and Game},
type = {Fishery Manuscript Series},
number = {12-08},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FMS12-08.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FMS12-08.pdf} [last accessed 2/20/2019]},
}
@techreport{head-smith-2018,
author = {J. M. Head and N. J. Smith},
year = {2018},
title = {Salmon escapement monitoring in the {Kuskokwim Area}, 2017},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {18-11},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS18-11.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS18-11.pdf} [last accessed 2/20/2019]},
}
@book {hilborn-walters-1992,
author = {Ray Hilborn and Carl J. Walters},
year = {1992},
title = {Quantitative Fisheries Stock Assessment: Choice, Dynamics, and Uncertainty.},
publisher = {Springer US},
isbn = {978-1461535980},
}
@techreport{korman-english-2013,
author = {J. Korman and K. English},
year = {2013},
title = {Benchmark analysis for {Pacific} salmon conservation units in the {Skeena} watershed},
institution = {},
type = {A report to {Pacific Salmon Foundation}},
number = {},
address = {},
url = {},
}
@techreport{liller-etal-2018,
author = {Z. W. Liller and H. Hamazaki and G. Decossas and W. Bechtol and M. Catalano and N. Smith},
year = {2018},
title = {{Kuskokwim River Chinook} salmon run reconstruction model revision -- executive summary},
institution = {Alaska Department of Fish and Game},
type = {Regional Information Report},
number = {3A.18-04},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/RIR.3A.2018.04.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/RIR.3A.2018.04.pdf} [last accessed 2/20/2019]},
}
@techreport{fall-etal-2018,
author = {J. A. Fall and A. Godduhn and G Halas and L Hutchinson-Scarbrough and B. Jones and E. Mikow and L.A. Sill and A. Trainor and A. Wiita and T. Lemons},
year = {2018},
title = {Alaska subsistence and personal use salmon fisheries 2015 annual report},
institution = {Alaska Department of Fish and Game},
type = {Technical Paper},
number = {440},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/techpap/TP440.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/techpap/TP440.pdf} [last accessed 2/20/2019]},
}
@inproceedings{linderman-bergstrom-2009,
author = {J. C. Linderman and D. J. Bergstrom},
year = {2009},
title = {Kuskokwim Management Area: Salmon Escapement, Harvest, and Management},
booktitle = {Pacific Salmon: Ecology and Management of Western Alaska's Populations},
editor = {C. C. Krueger and C. E. Zimmerman},
series = {American Fisheries Society Symposium 70},
pages = {541--599},
publisher = {},
address = {Bethesda, MD}
}
@article{mantua-etal-1997,
author = {N. J. Mantua and S. R. Hare and Y. Zhang and J. M. Wallace and R. C. Francis},
year = {2017} ,
title = {A {Pacific} Interdecadal Oscillation with Impacts on Salmon Production},
journal = {Bulletin of the American Meterological Society},
volume = {78},
number = {6},
pages = {1069--1079},
url = {https://journals.ametsoc.org/doi/10.1175/1520-0477%281997%29078%3C1069%3AAPICOW%3E2.0.CO%3B2},
doi = {10.1175/1520-0477(1997)078<1069:APICOW>2.0.CO;2}
}
@book{neter-etal-1996,
author = {J. Neter and M. H. Kutner and C.J. Nachtsheim and W. Wasserman},
year = {1996},
title = {Applied linear statistical models},
publisher = {Irwin},
location = {Chicago, IL USA},
}
@manual{plummer-2017,
title = {JAGS Version 4.3.0 {User Manual}},
author = {M. Plummer},
year = {2017},
}
@techreport{templin-etal-2004,
author = {W. D. Templin and C. T. Smith and D. Molyneaux, L. W. Seeb},
year = {2014},
title = {Genetic diversity of {Chinook} salmon from the {Kuskokwim River}.},
institution = {Alaska Department of Fish and Game},
type = {USFWS Office of Subsistence Management, Fisheries Resource Monitoring Program, Final Report},
number = {01-070},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/static/fishing/pdfs/research/fis01-070_final_report.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/static/fishing/pdfs/research/fis01-070_final_report.pdf} [last accessed 2/20/2019]},
}
@book{walters-1986,
author = {Carl J. Walters},
year = {1986},
title = {Adaptive Management of Renewable Resources},
publisher = {Blackburn Press},
isbn = {978-1930665439}
}
@book{walters-martell-2004,
author = {Carl J. Walters and Steven J. D. Martell},
year = {2004},
title = {Fisheries Ecology and Management},
publisher = {Princeton University Press},
isbn = {978-0691115450}
}
@techreport{walters-etal-2008,
author = {C. J. Walters and J. A. Lichatowich and R. M. Peterman and J. D. Reynolds},
year = {2008},
title = {Report of the {Skeena} independent science reivew panel},
institution = {},
type = {A report to the {Canadian} {Department} of {Fisheries} and {Oceans} and the {British} {Columbia} {Ministry} of the {Environment}},
number = {},
address = {},
url = {}
}
@inproceedings{wolfe-spaeder-2009,
author = {R. J. Wolfe and J. Spaeder},
year = {2009},
title = {People and Salmon of the {Yukon} and {Kuskokwim} Drainages and {Norton Sound} in {Alaska}: Fishery Harvests, Culture Change, and Local Knowledge System},
booktitle = {Pacific Salmon: Ecology and Management of Western Alaska's Populations},
editor = {C. C. Krueger and C. E. Zimmerman},
series = {American Fisheries Society Symposium 70},
pages = {349--379},
publisher = {},
address = {Bethesda, MD}
}
@book{xie-2015,
title = {Dynamic Documents with {R} and knitr},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2015},
edition = {2nd},
note = {ISBN 978-1498716963},
url = {http:https://yihui.name/knitr/},
}
@Article{hamon-etal-2000,
author = {T. R. Hamon and C. J. Foote and R. Hilborn and D. E. Rogers},
year = {2000},
title = {Selection on morphology of spawning wild sockeye salmon by a gill-net fishery},
journal = {Transactions of the American Fisheries Society},
volume = {129},
number = {6},
pages = {1300 -- 1315},
url = {https://www.tandfonline.com/doi/abs/10.1577/1548-8659(2000)129%3C1300%3ASOMOSW%3E2.0.CO%3B2},
}
@techreport{stuby-2007,
author = {L. Stuby},
year = {2007},
title = {Inriver abundance of {Chinook} salmon in the {Kuskokwim River}, 2002 -- 2006},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {07-93},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS07-93.pdf}
}
@techreport{smith-liller-2017a,
author = {N. J. Smith and Z. W. Liller},
year = {2017},
title = {Inriver abundance and migration characteristics of {Kuskokwim River Chinook} salmon, 2015},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {17-22},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS17-22.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS17-22.pdf} [last accessed 2/20/2019]}
}
@techreport{smith-liller-2017b,
author = {N. J. Smith and Z. W. Liller},
year = {2017},
title = {Inriver abundance and migration characteristics of {Kuskokwim River Chinook} salmon, 2016},
institution = {Alaska Department of Fish and Game},
type = {Fishery Data Series},
number = {17-47},
address = {Anchorage, AK},
url = {http:https://www.adfg.alaska.gov/FedAidPDFs/FDS17-47.pdf},
note = {Available at: \url{http:https://www.adfg.alaska.gov/FedAidPDFs/FDS17-47.pdf} [last accessed 2/20/2019]}
}
@TechReport{staton-2018,
author = {B. A. Staton},
year = {2018},
month = {jan},
title = {In-season harvest and effort estimates for 2018 {Kuskokwim River} Subsistence Salmon Fisheries During Block Openers},
institution = {Yukon Delta National Wildlife Refuge, U.S. Fish and Wildlife Service},
address = {Bethel, AK},
type = {Project Summary Report},
url = {https://www.fws.gov/uploadedFiles/2018KuskokwimRiverSalmonSubsistenceHarvestReport.pdf},
note = {Available at: \url{https://www.fws.gov/uploadedFiles/2018KuskokwimRiverSalmonSubsistenceHarvestReport.pdf} [last accessed 2/20/2019]}
}
@TechReport{staton-coggins-2017,
author = {B. A. Staton and Coggins, Jr., L. G.},
year = {2017},
title = {In-season harvest and effort estimates for 2017 {Kuskokwim River} Subsistence Salmon Fisheries During Block Openers},
url = {https://www.fws.gov/uploadedFiles/2017KuskokwimRiverSubsistenceSalmonHarvest.pdf},
institution = {Yukon Delta National Wildlife Refuge, U.S. Fish and Wildlife Service},
address = {Bethel, AK},
type = {Project Summary Report},
note = {Available at: \url{https://www.fws.gov/uploadedFiles/2017KuskokwimRiverSubsistenceSalmonHarvest.pdf} [last accessed 2/20/2019]}
}
@TechReport{staton-coggins-2016,
author = {B. A. Staton and Coggins, Jr., L. G.},
year = {2016},
title = {In-season harvest and effort estimates for 2016 {Kuskokwim River} Subsistence Salmon Fisheries During Block Openers},
url = {https://www.fws.gov/uploadedFiles/2016KuskokwimRiverSubsistenceSalmonHarvest.pdf},
institution = {Yukon Delta National Wildlife Refuge, U.S. Fish and Wildlife Service},
address = {Bethel, AK},
type = {Project Summary Report},
note = {Available at: \url{https://www.fws.gov/uploadedFiles/2016KuskokwimRiverSubsistenceSalmonHarvest.pdf} [last accessed 2/20/2019]},
}
@techreport{walters-buckingham-1975,
author = {Carl J. Walters and Sandy Buckingham},
year = {1975},
title = {A Control System for Intraseason Salmon Management},
institution = {International Institute for Applied Systems Analysis},
type = {Working Paper},
number = {WP-75-028},
address = {Laxenburg, Austria},
url = {},
}
@Manual{r-codaTools,
title = {codaTools: Utilities for Dealing with mcmc.lists},
author = {Benjamin Staton},
year = {2018},
month = {apr},
note = {R package version 0.1.1 available at https://github.com/bstaton1/codaTools},
}
@Manual{r-SimSR,
title = {SimSR: Tools for Simulating Pacific Salmon Spawner-Recruit Dynamics},
author = {Benjamin Staton},
year = {2018},
month = {feb},
note = {R package version 0.1.2 available at https://github.com/bstaton1/SimSR},
}
@Manual{r-FitSR,
title = {FitSR: Functions to Fit and Summarize SRA Models},
author = {Benjamin Staton},
year = {2018},
month = {mar},
note = {R package version 0.1.2 available at https://github.com/bstaton1/FitSR},
}
@Manual{r-cite,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2018},
url = {https://www.R-project.org/},
}
@Manual{r-jagsUI,
title = {jagsUI: A Wrapper Around `rjags' to Streamline `JAGS' Analyses},
author = {Ken Kellner},
year = {2017},
note = {R package version 1.4.9},
url = {https://CRAN.R-project.org/package=jagsUI},
}
@Article{r-coda,
title = {CODA: Convergence Diagnosis and Output Analysis for MCMC},
author = {Martyn Plummer and Nicky Best and Kate Cowles and Karen Vines},
journal = {R News},
year = {2006},
volume = {6},
number = {1},
pages = {7--11},
url = {https://journal.r-project.org/archive/},
pdf = {https://www.r-project.org/doc/Rnews/Rnews_2006-1.pdf},
}