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the webpage is always blank #23

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Yu1993Yu opened this issue May 6, 2019 · 3 comments
Closed

the webpage is always blank #23

Yu1993Yu opened this issue May 6, 2019 · 3 comments

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@Yu1993Yu
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Yu1993Yu commented May 6, 2019

Thanks for your working on this project and great sharing code, there are some problems with me when I run the code.
I just git clone and run the command as:
python3 __main__.py
but the errors appeared like this:(I just copy all of them from my terminal, so maybe the format is strange):

`/usr/local/lib/python3.7/site-packages/Bio/PDB/Vector.py:42: BiopythonDeprecationWarning: The module Bio.PDB.Vector has been deprecated in favor of new module Bio.PDB.vectors to solve a name collision with the class Vector. For the class Vector, and vector functions like calc_angle, import from Bio.PDB instead.
"import from Bio.PDB instead.", BiopythonDeprecationWarning)

--- OpenProtein v0.1 ---

Starting pre-processing of raw data...
['data/raw/sample.txt']
Preprocessed file for sample.txt already exists.
Skipping pre-processing for this file...
Completed pre-processing.

  • Serving Flask app "dashboard" (lazy loading)
  • Environment: production
    WARNING: Do not use the development server in a production environment.
    Use a production WSGI server instead.
  • Debug mode: off
    Exception in thread Thread-1:
    Traceback (most recent call last):
    File "/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib/python3.7/threading.py", line 917, in _bootstrap_inner
    self.run()
    File "/Users/AlexYU/Desktop/openprotein/dashboard.py", line 37, in run
    app.run(debug=False, host='0.0.0.0')
    File "/usr/local/lib/python3.7/site-packages/flask/app.py", line 943, in run
    run_simple(host, port, self, **options)
    File "/usr/local/lib/python3.7/site-packages/werkzeug/serving.py", line 990, in run_simple
    inner()
    File "/usr/local/lib/python3.7/site-packages/werkzeug/serving.py", line 943, in inner
    fd=fd,
    File "/usr/local/lib/python3.7/site-packages/werkzeug/serving.py", line 786, in make_server
    host, port, app, request_handler, passthrough_errors, ssl_context, fd=fd
    File "/usr/local/lib/python3.7/site-packages/werkzeug/serving.py", line 679, in init
    HTTPServer.init(self, server_address, handler)
    File "/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socketserver.py", line 452, in init
    self.server_bind()
    File "/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/server.py", line 137, in server_bind
    socketserver.TCPServer.server_bind(self)
    File "/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socketserver.py", line 466, in server_bind
    self.socket.bind(self.server_address)
    OSError: [Errno 48] Address already in use

2019-05-06 15:39:05: Embed time: 0.00033283233642578125
Traceback (most recent call last):
File "main.py", line 67, in
minimum_updates=args.minimum_updates)
File "/Users/AlexYU/Desktop/openprotein/training.py", line 38, in train_model
loss = model.compute_loss(training_minibatch)
File "/Users/AlexYU/Desktop/openprotein/openprotein.py", line 45, in compute_loss
emissions, backbone_atoms_padded, batch_sizes = self._get_network_emissions(original_aa_string)
File "/Users/AlexYU/Desktop/openprotein/models.py", line 49, in _get_network_emissions
(data, bi_lstm_batches), self.hidden_layer = self.bi_lstm(packed_input_sequences, self.hidden_layer)
ValueError: too many values to unpack (expected 2)`

the webpage opened after the errors, unfortunately its blank, just like this:

image

By the way, my environment:

  • python3.7

  • pytorch 1.1

  • node 10.15

  • macOS Mojave

I just want have test with the code on my computer, what should I do to fix the problems? Any help would be greatly appreciated.
Thanks for the great working again.

@JeppeHallgren
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Hey @Yu1993Yu , I believe this is the same issue as #26 , which should now be fixed if you pull the latest master. Thanks!

@Yu1993Yu
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Yu1993Yu commented May 24, 2019

Hey @Yu1993Yu , I believe this is the same issue as #26 , which should now be fixed if you pull the latest master. Thanks!

Great! Its simply fix it by clone again!A lot of thanks to you,Sir. Wish u have a good day!

@JeppeHallgren
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Great!

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