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Describe the bug I set a global_config setting like:
global_config.normalizer.shuffle_direction = 5
I then call assembly_mapper:
variant_mapper: assemblymapper.AssemblyMapper = assemblymapper.AssemblyMapper( connection, assembly_name="GRCh37", alt_aln_method="splign", normalize=1, prevalidation_level="INTRINSIC", )
with a print statement, I can see that this config value is set correctly here in assembly mapper:
But when the Normalizer class is initialized, it is pulling whatever value is in the _data/defaults.ini file (and I'm not sure why)
A print here shows this is '3' instead of the expected 5 value that was set:
To Reproduce Described above
Expected behavior For this configuration value to be set globally
The text was updated successfully, but these errors were encountered:
jsstevenson
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Describe the bug
I set a global_config setting like:
I then call assembly_mapper:
with a print statement, I can see that this config value is set correctly here in assembly mapper:
But when the Normalizer class is initialized, it is pulling whatever value is in the _data/defaults.ini file (and I'm not sure why)
A print here shows this is '3' instead of the expected 5 value that was set:
To Reproduce
Described above
Expected behavior
For this configuration value to be set globally
The text was updated successfully, but these errors were encountered: