Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

MACS -- Model-based Analysis of ChIP-Seq

Reproducing all analyses and figures for the ASAP-seq paper

Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization

Free Data Engineering course!

Programming-related notes

Useful bash one-liners for bioinformatics.

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

List of Computer Science courses with video lectures.

A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

This holds iPython notebooks and lecture slides for the Intro to Data Science Master's course I teach at NYU.

Contains files for the deep learning in genomics primer.

Read-based phasing of genomic variants, also called haplotype assembly

👦 👧 Technical-Interview guidelines written for those who started studying programming. I wish you all the best. 👾