Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Warning for samples.tsv column names already defined in the standard. #1926

Open
achilleasNP opened this issue Apr 5, 2024 · 1 comment
Open
Labels

Comments

@achilleasNP
Copy link

Hi,

I get the warning below while all three columns mentioned are a required part of the standard. I get the warning, even when I use the v1.7.0 schema (using the -s v1.7.0) that includes the definition of those columns.

  2: [WARN] Tabular file contains custom columns not described in a data dictionary (code: 82 - CUSTOM_COLUMN_WITHOUT_DESCRIPTION) 
	./samples.tsv 			
       Evidence: Columns: sample_id, participant_id, sample_type not defined, please define in: /samples.json 

I am using version 1.14.4 of the validator.

Thanks in advance,
Achilleas

@effigies
Copy link
Collaborator

The attempt to incorporate schema validation into the legacy validator failed. Please test the schema validator using the instructions in

https://github.com/bids-standard/bids-validator/blob/master/bids-validator/src/README.md

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants