Stars
✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
preon (PREcision Oncology Normalization) is a fuzzy search tool for medical entities.
TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI
🔬 Path to a free self-taught education in Bioinformatics!
An implementation of a deep learning recommendation model (DLRM)
Rest API to search the 10th revision of the International Statistical Classification of Diseases Database.
Python data repo, jupyter notebook, python scripts and data.
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
Databricks’ Dolly, a large language model trained on the Databricks Machine Learning Platform
[ACL-IJCNLP 2021] Automated Concatenation of Embeddings for Structured Prediction
A Machine Learning Classifier for Lung & Colon Cancer Histopathological Images.
A clinical terminology annotation dashboard created using Plotly Dash & the MIMIC-IV database.
LLMs build upon Evol Insturct: WizardLM, WizardCoder, WizardMath
Repository for the GA4GH phenopacket schema
FHIR Resources https://www.hl7.org/fhir/resourcelist.html
A workshop to explore the current methods for processing and analysis of scRNA datasets
Python port of "Common statistical tests are linear models" by Jonas Kristoffer Lindeløv.
Converts DICOM Resources to FHIR Resources
FUME is a FHIR conversion tool. Transform any data format to and from FHIR, including CSV, JSON, XML and HL7 V2, using the FUME mapping language
vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
Public repository for VariantValidator project