4 Issues closed by 3 people

• Sequences with binominal species aren't in silva_species_assignment_v138.1.fa.gz

  #1557 closed Nov 22, 2024

• Updated GreenGenes database formatting for DADA2

  #1680 closed Nov 22, 2024

• error with fastqFilter function

  #2057 closed Nov 21, 2024

• running the pipeline with reverse reads only (only R2 available)?

  #2056 closed Nov 21, 2024

4 Issues opened by 3 people

• Running DADA2 on clusters with pool option -- run of memory

  #2061 opened Nov 22, 2024

• Should I trim the primers for dada2 workflow?

  #2060 opened Nov 20, 2024

• question about using derepFastq function

  #2059 opened Nov 20, 2024

• Long Run Time for Qiime DADA2 Paired-End Denoising

  #2058 opened Nov 19, 2024

3 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• Binned quality scores and their effect on (non-decreasing) trans rates

  #1307 commented on Nov 18, 2024 • 0 new comments

• nbases argument ignored?

  #2054 commented on Nov 22, 2024 • 0 new comments

• Error at mergePairs step: table(pairdf$forward, pairdf$reverse) : attempt to make a table with >= 2^31 elements

  #2055 commented on Nov 23, 2024 • 0 new comments