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With foldseek, one can run:
foldseek createdb 5uak.pdb 5Uak_DB foldseek lndb 5uak_DB 5uak_DB_ss_h foldseek convert2fasta 5uak_DB_ss_h 5uak.fasta
The Cpp code hwoever looks like a bit of a pain to build in: https://github.com/steineggerlab/foldseek/blob/master/lib/3di/structureto3di.cpp
This python port is an alternative: https://github.com/althonos/mini3di but this seems to give different results to the above if it does work, seems like it would be pretty easy to run python from within rust: https://pyo3.rs/v0.21.2/python-from-rust/calling-existing-code
Or there is also language model: https://github.com/mheinzinger/ProstT5
The text was updated successfully, but these errors were encountered:
vrbouza
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With foldseek, one can run:
The Cpp code hwoever looks like a bit of a pain to build in:
https://github.com/steineggerlab/foldseek/blob/master/lib/3di/structureto3di.cpp
This python port is an alternative:
https://github.com/althonos/mini3di
but this seems to give different results to the above
if it does work, seems like it would be pretty easy to run python from within rust:
https://pyo3.rs/v0.21.2/python-from-rust/calling-existing-code
Or there is also language model:
https://github.com/mheinzinger/ProstT5
The text was updated successfully, but these errors were encountered: