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Parsers

Two sample parsers of ProteinNet records are provided, one for the text-based file format (text_parser.py) and one for the TFRecord based file format (tf_parser.py).

Usage

Text-based parser (text_parser.py)

python text_parser.py text_sample > out

This will print the python dict corresponding to each record in text_sample to standard output. The function read_record can also be used to process ProteinNet records programmatically.

TF-based parser (tf_parser.py)

This parser can only be used programmatically by invoking the read_protein function. For an example of its use see the RGN repository.