Stars
Public RFDiffusionAA repo
Biological foundation modeling from molecular to genome scale
Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
Snakemake implementation of protein structure alignment software DaliLite v5
Pretrainable geometric graph neural network for antibody affinity maturation
This is a Phi-3 book for getting started with Phi-3. Phi-3, a family of open AI models developed by Microsoft. Phi-3 models are the most capable and cost-effective small language models (SLMs) avai…
Protein-ligand structure prediction
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
Official Pytorch Implementation of the paper: Wavelet Diffusion Models are fast and scalable Image Generators (CVPR'23)
PLM based active learning model for protein engineering
Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Protein Ligand INteraction Dataset and Evaluation Resource
Notebooks and environment set up for IQB 2024 workshop - Python for Molecular Docking
[ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
RoseTTAFold2 protein/nucleic acid complex prediction
Diffusion model based protein-ligand flexible docking method
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A docker-compose stack for Prometheus monitoring
Fusion of protein sequence and structural information, using denoising pre-training network for protein engineering (zero-shot).
Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
MMseqs2: ultra fast and sensitive search and clustering suite