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Error with collectInfo.sh #7

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Jaspreet56-creator opened this issue Jul 7, 2023 · 1 comment
Open

Error with collectInfo.sh #7

Jaspreet56-creator opened this issue Jul 7, 2023 · 1 comment

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@Jaspreet56-creator
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./collectInfo.sh -i /path/to/BACTERIA/COLLECTED_INFO/VALID

-- COLLECTING INFO --

INFO: organism type flag -V not specified. O(thers) assumed (default option).

  • PROCESSING DETAILS
    INFO: processing NON virus data
    INFO: filtering with DEFAULT match count threshold 5.
    INFO: filtering terminated. Generating data Matrix

Processing sample IgG_S4, with total read counts: 571, valid reads: 571, others reads: 0
... finished.
Output files written in the directory:
/path/to/BACTERIA/COLLECTED_INFO/VALID

Processing sample IgG_S4, with total read counts: 571, valid reads: 571, others reads: 0
... finished.
Output files written in the directory:
/path/to/BACTERIA/COLLECTED_INFO/VALID

INFO: processing terminated. Generating HTML report

ERROR !! NO FILES IN THE DIRECTORY: /path/to/BACTERIA/COLLECTED_INFO/VALID/BACTERIA/COLLECTED_INFO
ERROR !! NO FILES IN THE DIRECTORY: /path/to/BACTERIA/COLLECTED_INFO/VALID/BACTERIA/COLLECTED_INFOINFO: processing terminated. Output files written in the dir /path/to/BACTERIA/COLLECTED_INFO/VALID/BACTERIA/HTML_REPORTS

@amarinderthind
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Have you got any output in VALID folder?

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