Commits

Commits on Jun 14, 2024

Fix Python setup in test.yml Actions workflow
althonos
committedJun 14, 2024
Release v0.1.0-a3
althonos
committedJun 14, 2024
Update Cython headers to compile with Cython 3.0
althonos
committedJun 14, 2024

Commits on Apr 24, 2023

Implement Matrix constructor from an iterable of rows
althonos
committedApr 24, 2023

Commits on Apr 17, 2023

Remove codecov from Actions workflows requirements
althonos
committedApr 17, 2023

Commits on Apr 5, 2023

Fix setup of test requirements in test.yml Actions workflow
althonos
committedApr 5, 2023

Commits on Apr 4, 2023

Release v0.1.0-a2
althonos
committedApr 4, 2023
Move tests inside pymemesuite module to allow running in site install
althonos
committedApr 4, 2023
Update package.yml Actions workflow to use cibuildwheel
althonos
committedApr 4, 2023
Add additional tests for shortcut Background constructors
althonos
committedApr 4, 2023
Add Background.from_sequences to compute frequencies from a sequence collection
althonos
committedApr 4, 2023
Add reference paper to pymemesuite.fimo documentation
althonos
committedApr 4, 2023
Use older ubuntu image in test.yml workflow for Python 3.6 support
althonos
committedApr 4, 2023
Bump coverage upload action to v3 in test.yml workflow
althonos
committedApr 4, 2023
Remove module name from __repr__ implementations
althonos
committedApr 4, 2023
Implement equality comparison for Alphabet objects
althonos
committedApr 4, 2023
Require Background type where background model frequencies are expected
althonos
committedApr 4, 2023

Commits on Apr 3, 2023

Add Array.sum method to compute the sum of an array
althonos
committedApr 3, 2023
Add pymemesuite.common.Background class for storing the background model frequencies
althonos
committedApr 3, 2023
Fix badges in README.md [ci skip]
althonos
committedApr 3, 2023

Commits on May 28, 2022

Commits on May 22, 2022

Only compile necessary MEME files when building extensions
althonos
committedMay 22, 2022

Commits on May 18, 2022

Release v0.1.0-a1
althonos
committedMay 18, 2022
Fix example in README.md and add CONTRIBUTING.md [ci skip]
althonos
committedMay 18, 2022
Document all public methods and attributes of fimo.FIMO
althonos
committedMay 18, 2022
Document all public methods and attributes of common classes
althonos
committedMay 18, 2022
Update README.md with code examples [ci skip]
althonos
committedMay 18, 2022
Add property to access the p-values lookup table of a PSSM
althonos
committedMay 18, 2022
Add magic methods to access and edit elements of a Matrix
althonos
committedMay 18, 2022
Index sequences before scoring motifs in FIMO
althonos
committedMay 18, 2022
Fix memory leak in FIMO caused by outdated code
althonos
committedMay 18, 2022
Update MotifFile.background to support getting the background before first iteration
althonos
committedMay 18, 2022