Build error - missing Java library #17

M4a1x · 2023-03-17T20:34:05Z

Hi there, nice project. Finally, I found something using modern/recent packages!

I was trying to compile the cookbook.tex as is (no modifications) with the provided docker container in vscode and ran into the following error:

Exception in thread "main" java.lang.UnsatisfiedLinkError: Can't load library: /usr/lib/jvm/java-17-openjdk-amd64/lib/libawt_xawt.so

It looks like this is caused by the headless installation as manually installing default-jdk instead of default-jdk-headless inside the container fixes the problem.

I'm not too familiar with Docker, so I didn't get the Dockerfile to build on my machine, but I assume it should be a simple change of line 171 in the Dockerfile.

P.S.: It also compiles without issues (afaict) with the official texlive/texlive:latest image (changed in .devcontainer/devcontainer.json:21

The text was updated successfully, but these errors were encountered:

alexpovel · 2023-03-18T07:49:14Z

Hi and thanks for submitting your issue!

As it stands, I'm unable to reproduce it:

Online: By chance, just last week, I had pushed some commits to main where the corresponding pipeline passed. It runs inside the (latest) docker image as well:

latex-cookbook/.github/workflows/build.yml

Lines 6 to 10 in 80f08e4

 container: 

 image: alexpovel/latex 

 # Need root, otherwise this exact issue occurs: 

 # https://github.community/t/permission-problems-when-checking-out-code-as-part-of-github-action/202263 

 options: --user root

Offline: I launched VSCode, reopened this repo in the pre-configured dev container, accepted the suggestion of installing LaTeX Workshop, and ran its LaTeX Workshop: Build LaTeX Project command. It compiled fine, and the resulting PDF looks correct:

Both online and offline were compiled using alexpovel/latex:latest with digest sha256:6e3479e058e683f5ec1c942f5d109d7b69874a3e43f84107d57b61a6cab30ab5.

What's your local output of docker inspect --format '{{ .RepoDigests }}' alexpovel/latex:latest? If that's different from the above hash, please try again after a docker pull alexpovel/latex (omitting the tag implies latest). The tip of this repo (main) is set up to compile alongside the latest image. That's what the pipeline ensures. If you cloned this repo a while ago, this contract might have been violated. In that case, you can try if earlier tags work for you, e.g. alexpovel/latex:2021.

As you said you didn't modify anything, I assumed a clean clone of this repo. Otherwise, perhaps you hit on some glossaries-extra features I never used, requiring Java libs I never noticed were missing.

If you just want to get your work done and texlive/texlive:latest works for you, that might be an easy solution as well. This cookbook predates the existence of that image. Nowadays, I would've just used the official texlive one as well (provided it ships with the needed tools like JRE, Perl, ...).

alexpovel · 2023-03-18T08:25:48Z

I was now able to reproduce the behaviour. However, a local git clean -xfd && docker run --volume ${PWD}:/tex --rm --entrypoint="" alexpovel/latex:latest latexmk (this is what the LaTeX Workshop default recipe does) compiles fine, as expected from the latest CI run. I'm now suspecting VSCode's handling of the devcontainer. Looking into it...

alexpovel · 2023-03-18T11:41:22Z

Alright, should be fixed now. Tested with the latest image (that now has default-jre, aka the full, non-headless version)-- docker pull alexpovel/latex--and was no longer able to reproduce the issue.

Truly bizarre and the exact kind of issue Docker is designed to circumvent. Didn't feel like doing a deep dive though, so just bit the bullet and accepted the image being a couple hundred meg larger now ;)

M4a1x · 2023-03-18T11:47:42Z

Hi! Wow that was quick.

so I just tried again to be sure and I definitely hit this with a fresh clone. My exact steps:

 > git clone https://github.com/alexpovel/latex-cookbook.git

Open VScode (v.1.76.2 from Fedora repos, Date: 2023-03-14)
Choose Open Folder... and select latex-cookbook
Prompt to open Workspace in Remote: Open in remote
Wait until all extensions etc. are installed
Execute Latex Workshop: Build LaTeX project
It fails pretty quickly, just a few seconds

Outputs in vscode:

LaTeX Compiler

Rc files read:
  .latexmkrc
Latexmk: This is Latexmk, John Collins, 17 Mar. 2022. Version 4.77, version: 4.77.
Latexmk: applying rule 'cusdep aux glstex cookbook'...
Rule 'cusdep aux glstex cookbook': The following rules & subrules became out-of-date:
  cusdep aux glstex cookbook
------------
Run number 1 of rule 'cusdep aux glstex cookbook'
------------
bib2gls 3.0 (2022-10-14)
Reading cookbook.aux
Exception in thread "main" java.lang.UnsatisfiedLinkError: Can't load library: /usr/lib/jvm/java-11-openjdk-amd64/lib/libawt_xawt.so
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2633)
	at java.base/java.lang.Runtime.load0(Runtime.java:768)
	at java.base/java.lang.System.load(System.java:1837)
	at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method)
	at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2445)
	at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2501)
	at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2700)
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2651)
	at java.base/java.lang.Runtime.loadLibrary0(Runtime.java:830)
	at java.base/java.lang.System.loadLibrary(System.java:1873)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1399)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1397)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.desktop/java.awt.Toolkit.loadLibraries(Toolkit.java:1396)
	at java.desktop/java.awt.Toolkit.<clinit>(Toolkit.java:1429)
	at java.desktop/java.awt.Color.<clinit>(Color.java:275)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.initColors(ColorSty.java:50)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.<init>(ColorSty.java:43)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.getLaTeXSty(LaTeXParserListener.java:1796)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1627)
	at com.dickimawbooks.texparserlib.latex.hyperref.HyperrefSty.preOptions(HyperrefSty.java:39)
	at com.dickimawbooks.texparserlib.latex.LaTeXFile.processOptions(LaTeXFile.java:188)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1640)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1578)
	at com.dickimawbooks.texparserlib.html.L2HConverter.addPredefined(L2HConverter.java:265)
	at com.dickimawbooks.texparserlib.TeXParserListener.setParser(TeXParserListener.java:271)
	at com.dickimawbooks.texparserlib.TeXParser.<init>(TeXParser.java:114)
	at com.dickimawbooks.bib2gls.Bib2Gls.initInterpreter(Bib2Gls.java:1078)
	at com.dickimawbooks.bib2gls.Bib2Gls.process(Bib2Gls.java:1893)
	at com.dickimawbooks.bib2gls.Bib2Gls.main(Bib2Gls.java:6572)
Latexmk: In running custom-dependency rule
  to make 'cookbook.glstex' from 'cookbook.aux'
  function 'run_bib2gls' did not make the destination.
Latexmk: If appropriate, the -f option can be used to get latexmk
  to try to force complete processing.
Latexmk: Errors, so I did not complete making targets
Collected error summary (may duplicate other messages):
  cusdep aux glstex cookbook: Command for 'cusdep aux glstex cookbook' gave return code -1
'cusdep aux glstex cookbook': time = 1.42
Accumulated processing time = 1.45
Number of rules run = 1

LaTeX Workshop

[11:23:36][Logger] New log placeholder %WS1% registered for /workspaces/latex-cookbook .
[11:23:36][Config] Configuration for workspace: file:https://%WS1% .
[11:23:36][Config] editor.acceptSuggestionOnEnter: "on" .
[11:23:36][Config] latex-workshop.bind.enter.key: true .
[11:23:36][Config] latex-workshop.docker.enabled: false .
[11:23:36][Config] latex-workshop.docker.image.latex: "" .
[11:23:36][Config] latex-workshop.hover.preview.mathjax.extensions: [] .
[11:23:36][Config] latex-workshop.intellisense.package.enabled: true .
[11:23:36][Config] latex-workshop.intellisense.update.aggressive.enabled: false .
[11:23:36][Config] latex-workshop.intellisense.update.delay: 1000 .
[11:23:36][Config] latex-workshop.latex.autoBuild.run: "never" .
[11:23:36][Config] latex-workshop.latex.build.forceRecipeUsage: true .
[11:23:36][Config] latex-workshop.latex.outDir: "%DIR%/out" .
[11:23:36][Config] latex-workshop.latex.recipes: [
 {
  "name": "latexmk",
  "tools": [
   "latexmk"
  ]
 },
 {
  "name": "lualatex",
  "tools": [
   "lualatex"
  ]
 }
] .
[11:23:36][Config] latex-workshop.latex.tools: [
 {
  "name": "lualatex",
  "command": "lualatex",
  "args": [
   "--shell-escape",
   "--synctex=1",
   "--recorder",
   "%DOC%"
  ]
 },
 {
  "name": "latexmk",
  "command": "latexmk",
  "args": [
   "%DOC%"
  ]
 }
] .
[11:23:36][Config] latex-workshop.viewer.pdf.internal.keyboardEvent: "auto" .
[11:23:36][Manager] Set $LATEXWORKSHOP_DOCKER_LATEX: ""
[11:23:36][Server] Creating LaTeX Workshop http and websocket server.
[11:23:36][Server] Server successfully started: {"address":"127.0.0.1","family":"IPv4","port":45995} .
[11:23:36][Extension] Initializing LaTeX Workshop.
[11:23:36][Extension] Extension root: /home/tex/.vscode-server/extensions/james-yu.latex-workshop-9.7.0
[11:23:36][Extension] $PATH: /vscode/vscode-server/bin/linux-x64/ee2b180d582a7f601fa6ecfdad8d9fd269ab1884/bin/remote-cli:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
[11:23:36][Extension] $SHELL: /bin/sh
[11:23:36][Extension] $LANG: undefined
[11:23:36][Extension] $LC_ALL: POSIX
[11:23:36][Extension] process.platform: linux
[11:23:36][Extension] process.arch: x64
[11:23:36][Extension] vscode.env.appName: Visual Studio Code
[11:23:36][Extension] vscode.env.remoteName: dev-container
[11:23:36][Extension] vscode.env.uiKind: 1
[11:23:36][Extension] LaTeX Workshop initialized.
[11:23:36][Format][Bib] Bibtex format config: {"tab":"  ","case":"lowercase","left":"{","right":"}","trailingComma":false,"sort":["key"],"alignOnEqual":true,"sortFields":false,"fieldsOrder":[],"firstEntries":["string","xdata"]}
[11:23:36][Extension] Trigger characters for intellisense of LaTeX documents: ["\\",",","{"]
[11:23:36][Manager] Current workspace folders: ["file:https://%WS1%"]
[11:23:36][Manager] Found root file from active editor: %WS1%/cookbook.tex
[11:23:36][Manager] Root file changed: from undefined to %WS1%/cookbook.tex
[11:23:36][Manager] Start to find all dependencies.
[11:23:36][Manager] Root file languageId: latex
[11:23:36][Cacher][Watcher] Reset.
[11:23:36][Cacher] Adding %WS1%/cookbook.tex .
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[11:23:36][Linter] ChkTeX lints root %WS1%/cookbook.tex .
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[11:23:37][Cacher] Updated bibs of %WS1%/cookbook.tex .
[11:23:37][Cacher] Cached %WS1%/cookbook.tex .
[11:23:37][Cacher][Path] Non-existent .fls for %WS1%/cookbook.tex .
[11:23:37][Structure] Error loading AST during structuring: %WS1%/chapters/mainmatter/base-features.tex .
[11:23:37][Structure] Structure force updated with 7 root sections for %WS1%/cookbook.tex .
[11:23:37][Intelli][Citation] Parsed 14 bib entries from %WS1%/bib/bibliography.bib .
[11:23:37][Structure] Error loading AST during structuring: %WS1%/chapters/mainmatter/base-features.tex .
[11:23:37][Structure] Structure force updated with 7 root sections for %WS1%/cookbook.tex .
[11:23:47][Commander] BUILD command invoked.
[11:23:47][Commander] The document of the active editor: file:https://%WS1%/cookbook.tex
[11:23:47][Commander] The languageId of the document: latex
[11:23:47][Manager] Current workspace folders: ["file:https://%WS1%"]
[11:23:47][Manager] Found root file from active editor: %WS1%/cookbook.tex
[11:23:47][Manager] Keep using the same root file: %WS1%/cookbook.tex
[11:23:47][Structure] Structure updated with 7 root sections for %WS1%/cookbook.tex .
[11:23:47][Commander] Building root file: %WS1%/cookbook.tex
[11:23:47][Builder] Build root file %WS1%/cookbook.tex
[11:23:47][Builder] outDir: %WS1%/out .
[11:23:47][Builder] Found TeX program by magic comment: lualatex.
[11:23:47][Builder] Preparing to run recipe: latexmk.
[11:23:47][Builder] Prepared 1 tools.
[11:23:47][Builder] Recipe step 1 The command is latexmk:["%WS1%/cookbook"].
[11:23:47][Builder] env: undefined
[11:23:47][Builder] root: %WS1%/cookbook.tex
[11:23:47][Builder] cwd: %WS1%
[11:23:47][Builder] LaTeX build process spawned with PID 667.
[11:24:37][Parser][TexLog] Logged 832 messages.
[11:24:37][Builder] Recipe returns with error code 12/null on PID 667.
[11:24:37][Builder] Does the executable exist? $PATH: /vscode/vscode-server/bin/linux-x64/ee2b180d582a7f601fa6ecfdad8d9fd269ab1884/bin/remote-cli:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin, $Path: undefined, $SHELL: /bin/sh
[11:24:37][Builder] tput: No value for $TERM and no -T specified
Failed to get connection
** (org.inkscape.Inkscape:789): CRITICAL **: 11:23:57.840: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:789): CRITICAL **: 11:23:57.840: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:789): CRITICAL **: 11:23:57.840: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:803): CRITICAL **: 11:23:58.281: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:803): CRITICAL **: 11:23:58.281: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:803): CRITICAL **: 11:23:58.281: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:817): CRITICAL **: 11:23:58.436: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:817): CRITICAL **: 11:23:58.436: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:817): CRITICAL **: 11:23:58.436: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:832): CRITICAL **: 11:23:58.745: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:832): CRITICAL **: 11:23:58.745: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:832): CRITICAL **: 11:23:58.745: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:958): CRITICAL **: 11:24:20.470: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:958): CRITICAL **: 11:24:20.470: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:958): CRITICAL **: 11:24:20.470: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:972): CRITICAL **: 11:24:20.618: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:972): CRITICAL **: 11:24:20.618: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:972): CRITICAL **: 11:24:20.618: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:987): CRITICAL **: 11:24:20.764: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:987): CRITICAL **: 11:24:20.764: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:987): CRITICAL **: 11:24:20.764: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1001): CRITICAL **: 11:24:20.910: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1001): CRITICAL **: 11:24:20.910: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1001): CRITICAL **: 11:24:20.910: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1015): CRITICAL **: 11:24:21.073: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1015): CRITICAL **: 11:24:21.073: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1015): CRITICAL **: 11:24:21.073: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1029): CRITICAL **: 11:24:21.217: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1029): CRITICAL **: 11:24:21.217: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1029): CRITICAL **: 11:24:21.217: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1043): CRITICAL **: 11:24:21.366: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1043): CRITICAL **: 11:24:21.366: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1043): CRITICAL **: 11:24:21.366: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1057): CRITICAL **: 11:24:21.512: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1057): CRITICAL **: 11:24:21.512: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1057): CRITICAL **: 11:24:21.512: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1071): CRITICAL **: 11:24:21.660: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1071): CRITICAL **: 11:24:21.660: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1071): CRITICAL **: 11:24:21.660: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1086): CRITICAL **: 11:24:21.809: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1086): CRITICAL **: 11:24:21.809: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1086): CRITICAL **: 11:24:21.809: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1100): CRITICAL **: 11:24:21.960: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1100): CRITICAL **: 11:24:21.960: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1100): CRITICAL **: 11:24:21.960: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1117): CRITICAL **: 11:24:22.113: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1117): CRITICAL **: 11:24:22.114: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1117): CRITICAL **: 11:24:22.114: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1131): CRITICAL **: 11:24:22.261: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1131): CRITICAL **: 11:24:22.261: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1131): CRITICAL **: 11:24:22.261: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1145): CRITICAL **: 11:24:22.409: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1145): CRITICAL **: 11:24:22.409: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1145): CRITICAL **: 11:24:22.409: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Failed to get connection
** (org.inkscape.Inkscape:1159): CRITICAL **: 11:24:22.558: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed

** (org.inkscape.Inkscape:1159): CRITICAL **: 11:24:22.558: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed

** (org.inkscape.Inkscape:1159): CRITICAL **: 11:24:22.558: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
Latexmk: Missing input file 'cookbook.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook.glstex' on input line 2838.'
Latexmk: Missing input file 'cookbook-1.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-1.glstex' on input line 2846.'
Latexmk: Missing input file 'cookbook-2.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-2.glstex' on input line 2855.'
Latexmk: Missing input file 'cookbook-3.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-3.glstex' on input line 2870.'
Latexmk: Missing input file 'cookbook-4.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-4.glstex' on input line 2885.'
Latexmk: Missing input file 'cookbook-5.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-5.glstex' on input line 2900.'
Latexmk: Missing input file 'cookbook-6.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-6.glstex' on input line 2909.'
Latexmk: Missing input file 'cookbook-7.glstex' (or dependence on it) from following:
  'Package glossaries-extra Warning: No file `cookbook-7.glstex' on input line 2915.'
Latexmk: Missing bbl file 'cookbook.bbl' in following:
 No file cookbook.bbl.
Latexmk: Missing input file 'cookbook.toc' (or dependence on it) from following:
  'No file cookbook.toc.'
Latexmk: Missing input file 'cookbook.lof' (or dependence on it) from following:
  'No file cookbook.lof.'
Latexmk: Missing input file 'cookbook.lot' (or dependence on it) from following:
  'No file cookbook.lot.'
Latexmk: Missing input file 'cookbook.loe' (or dependence on it) from following:
  'No file cookbook.loe.'
Latexmk: Missing input file 'cookbook.lol' (or dependence on it) from following:
  'No file cookbook.lol.'
Latexmk: Missing input file 'cookbook.lor' (or dependence on it) from following:
  'No file cookbook.lor.'
Exception in thread "main" java.lang.UnsatisfiedLinkError: Can't load library: /usr/lib/jvm/java-11-openjdk-amd64/lib/libawt_xawt.so
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2633)
	at java.base/java.lang.Runtime.load0(Runtime.java:768)
	at java.base/java.lang.System.load(System.java:1837)
	at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method)
	at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2445)
	at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2501)
	at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2700)
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2651)
	at java.base/java.lang.Runtime.loadLibrary0(Runtime.java:830)
	at java.base/java.lang.System.loadLibrary(System.java:1873)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1399)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1397)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.desktop/java.awt.Toolkit.loadLibraries(Toolkit.java:1396)
	at java.desktop/java.awt.Toolkit.<clinit>(Toolkit.java:1429)
	at java.desktop/java.awt.Color.<clinit>(Color.java:275)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.initColors(ColorSty.java:50)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.<init>(ColorSty.java:43)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.getLaTeXSty(LaTeXParserListener.java:1796)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1627)
	at com.dickimawbooks.texparserlib.latex.hyperref.HyperrefSty.preOptions(HyperrefSty.java:39)
	at com.dickimawbooks.texparserlib.latex.LaTeXFile.processOptions(LaTeXFile.java:188)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1640)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1578)
	at com.dickimawbooks.texparserlib.html.L2HConverter.addPredefined(L2HConverter.java:265)
	at com.dickimawbooks.texparserlib.TeXParserListener.setParser(TeXParserListener.java:271)
	at com.dickimawbooks.texparserlib.TeXParser.<init>(TeXParser.java:114)
	at com.dickimawbooks.bib2gls.Bib2Gls.initInterpreter(Bib2Gls.java:1078)
	at com.dickimawbooks.bib2gls.Bib2Gls.process(Bib2Gls.java:1893)
	at com.dickimawbooks.bib2gls.Bib2Gls.main(Bib2Gls.java:6572)
Latexmk: In running custom-dependency rule
  to make 'cookbook.glstex' from 'cookbook.aux'
  function 'run_bib2gls' did not make the destination.
Latexmk: ====List of undefined refs and citations:
  Reference `ch:using-docker' on page 1 undefined on input line 34
  Reference `ch:bib2gls' on page 1 undefined on input line 38
  Reference `ch:bibliography_rationale' on page 1 undefined on input line 41
  Reference `fig:inside_float' on page 1 undefined on input line 45
  Reference `fig:sidecap' on page 1 undefined on input line 45
  Reference `fig:multiple_floats' on page 1 undefined on input line 45
  Reference `fig:tighter_caption' on page 1 undefined on input line 45
 And 203 more --- see log file.
Latexmk: If appropriate, the -f option can be used to get latexmk
  to try to force complete processing.

[11:24:37][Builder] Cleaning auxiliary files and retrying build after toolchain error.
[11:24:37][Cleaner] Clean glob matched files {"globs":["*.aux","*.bbl","*.blg","*.idx","*.ind","*.lof","*.lot","*.out","*.toc","*.acn","*.acr","*.alg","*.glg","*.glo","*.gls","*.fls","*.log","*.fdb_latexmk","*.snm","*.synctex(busy)","*.synctex.gz(busy)","*.nav","*.vrb"],"outdir":"%WS1%/out"} .
[11:24:37][Cleaner] Ignore folder glob patterns with globstar:  .
[11:24:37][Builder] Recipe step 1 The command is latexmk:["%WS1%/cookbook"].
[11:24:37][Builder] env: undefined
[11:24:37][Builder] root: %WS1%/cookbook.tex
[11:24:37][Builder] cwd: %WS1%
[11:24:37][Builder] LaTeX build process spawned with PID 1259.
[11:24:38][Builder] Recipe returns with error code 12/null on PID 1259.
[11:24:38][Builder] Does the executable exist? $PATH: /vscode/vscode-server/bin/linux-x64/ee2b180d582a7f601fa6ecfdad8d9fd269ab1884/bin/remote-cli:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin, $Path: undefined, $SHELL: /bin/sh
[11:24:38][Builder] Exception in thread "main" java.lang.UnsatisfiedLinkError: Can't load library: /usr/lib/jvm/java-11-openjdk-amd64/lib/libawt_xawt.so
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2633)
	at java.base/java.lang.Runtime.load0(Runtime.java:768)
	at java.base/java.lang.System.load(System.java:1837)
	at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method)
	at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2445)
	at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2501)
	at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2700)
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2651)
	at java.base/java.lang.Runtime.loadLibrary0(Runtime.java:830)
	at java.base/java.lang.System.loadLibrary(System.java:1873)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1399)
	at java.desktop/java.awt.Toolkit$3.run(Toolkit.java:1397)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.desktop/java.awt.Toolkit.loadLibraries(Toolkit.java:1396)
	at java.desktop/java.awt.Toolkit.<clinit>(Toolkit.java:1429)
	at java.desktop/java.awt.Color.<clinit>(Color.java:275)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.initColors(ColorSty.java:50)
	at com.dickimawbooks.texparserlib.latex.color.ColorSty.<init>(ColorSty.java:43)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.getLaTeXSty(LaTeXParserListener.java:1796)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1627)
	at com.dickimawbooks.texparserlib.latex.hyperref.HyperrefSty.preOptions(HyperrefSty.java:39)
	at com.dickimawbooks.texparserlib.latex.LaTeXFile.processOptions(LaTeXFile.java:188)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1640)
	at com.dickimawbooks.texparserlib.latex.LaTeXParserListener.requirepackage(LaTeXParserListener.java:1578)
	at com.dickimawbooks.texparserlib.html.L2HConverter.addPredefined(L2HConverter.java:265)
	at com.dickimawbooks.texparserlib.TeXParserListener.setParser(TeXParserListener.java:271)
	at com.dickimawbooks.texparserlib.TeXParser.<init>(TeXParser.java:114)
	at com.dickimawbooks.bib2gls.Bib2Gls.initInterpreter(Bib2Gls.java:1078)
	at com.dickimawbooks.bib2gls.Bib2Gls.process(Bib2Gls.java:1893)
	at com.dickimawbooks.bib2gls.Bib2Gls.main(Bib2Gls.java:6572)
Latexmk: In running custom-dependency rule
  to make 'cookbook.glstex' from 'cookbook.aux'
  function 'run_bib2gls' did not make the destination.
Latexmk: If appropriate, the -f option can be used to get latexmk
  to try to force complete processing.

Remote Server

2023-03-18 11:22:23.929 [info] Extension host agent started.
2023-03-18 11:22:23.953 [debug] Removing uninstalled extensions: []
2023-03-18 11:22:23.957 [info] Started initializing default profile extensions in extensions installation folder. file:https:///home/tex/.vscode-server/extensions
2023-03-18 11:22:23.963 [debug] ComputeTargetPlatform: linux-x64
2023-03-18 11:22:23.967 [info] Completed initializing default profile extensions in extensions installation folder. file:https:///home/tex/.vscode-server/extensions
2023-03-18 11:22:24.019 [info] [127.0.0.1][49f2071b][ManagementConnection] New connection established.
2023-03-18 11:22:24.251 [info] [127.0.0.1][83358c71][ExtensionHostConnection] New connection established.
2023-03-18 11:22:24.256 [info] [127.0.0.1][83358c71][ExtensionHostConnection] <270> Launched Extension Host Process.
2023-03-18 11:22:24.568 [info] Getting Manifest... streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:24.586 [info] Getting Manifest... streetsidesoftware.code-spell-checker
2023-03-18 11:22:24.590 [info] Getting Manifest... james-yu.latex-workshop
2023-03-18 11:22:24.614 [info] Installing extension: streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:24.650 [info] Installing extension: streetsidesoftware.code-spell-checker
2023-03-18 11:22:24.674 [info] Installing extension: james-yu.latex-workshop
2023-03-18 11:22:24.792 [info] Getting Manifest... streetsidesoftware.code-spell-checker
2023-03-18 11:22:24.866 [info] Waiting for already requested installing extension streetsidesoftware.code-spell-checker streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:25.687 [info] Extension signature verification: streetsidesoftware.code-spell-checker. Verification status: Verified.
2023-03-18 11:22:25.707 [info] Extension signature verification: streetsidesoftware.code-spell-checker-german. Verification status: Verified.
2023-03-18 11:22:25.751 [info] Extracted extension to /home/tex/.vscode-server/extensions/.07b981dc-0c22-4eba-8d72-4497ef24656c: streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:25.759 [info] Renamed to /home/tex/.vscode-server/extensions/streetsidesoftware.code-spell-checker-german-2.2.1
2023-03-18 11:22:25.761 [info] Extracting extension completed. streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:25.884 [info] Extracted extension to /home/tex/.vscode-server/extensions/.a278c730-80c3-43ee-ab8d-1373ec90cf36: streetsidesoftware.code-spell-checker
2023-03-18 11:22:25.894 [info] Renamed to /home/tex/.vscode-server/extensions/streetsidesoftware.code-spell-checker-2.20.2
2023-03-18 11:22:25.895 [info] Extracting extension completed. streetsidesoftware.code-spell-checker
2023-03-18 11:22:25.897 [info] Extension installed successfully: streetsidesoftware.code-spell-checker
2023-03-18 11:22:25.898 [info] Finished waiting for already requested installing extension streetsidesoftware.code-spell-checker streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:25.898 [info] Extension installed successfully: streetsidesoftware.code-spell-checker-german
2023-03-18 11:22:25.907 [info] Extension signature verification: james-yu.latex-workshop. Verification status: Verified.
2023-03-18 11:22:26.425 [info] Extracted extension to /home/tex/.vscode-server/extensions/.97578ec7-5e1e-4a8e-8a0a-c348e3ebd936: james-yu.latex-workshop
2023-03-18 11:22:26.433 [info] Renamed to /home/tex/.vscode-server/extensions/james-yu.latex-workshop-9.7.0
2023-03-18 11:22:26.435 [info] Extracting extension completed. james-yu.latex-workshop
2023-03-18 11:22:26.437 [info] Extension installed successfully: james-yu.latex-workshop

EDIT: While writing this you already closed the issue 😅

You're right - with your above mentioned command line

git clean -xfd && docker run --volume ${PWD}:/tex --rm --entrypoint="" alexpovel/latex:latest latexmk

it compiled fine, but I just realized I already used the new image...

I'm leaving the output here, in case someone gets the urge to make the image smaller again 😛 Thanks for looking into this!

alexpovel closed this as completed in a314315 Mar 18, 2023

alexpovel added the bug Something isn't working label Mar 18, 2023

alexpovel self-assigned this Mar 18, 2023

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Build error - missing Java library #17

Build error - missing Java library #17

M4a1x commented Mar 17, 2023 •

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alexpovel commented Mar 18, 2023 •

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alexpovel commented Mar 18, 2023

alexpovel commented Mar 18, 2023

M4a1x commented Mar 18, 2023 •

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Build error - missing Java library #17

Build error - missing Java library #17

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M4a1x commented Mar 17, 2023 • edited Loading

alexpovel commented Mar 18, 2023 • edited Loading

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alexpovel commented Mar 18, 2023

M4a1x commented Mar 18, 2023 • edited Loading

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alexpovel commented Mar 18, 2023 •

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M4a1x commented Mar 18, 2023 •

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