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Issues list

Using both local and downloaded PDBs in ML DataLoaders enhancement New feature or request help wanted Extra attention is needed
#210 opened Sep 16, 2022 by a-r-j
1
Graphein Design Doc
#19 opened Sep 13, 2020 by ericmjl
4 of 7 tasks
13
Refactor granularity kwarg in protein.process_dataframe
#28 opened Dec 30, 2020 by ericmjl
Pre-processing code
#49 opened Feb 9, 2021 by ericmjl
Use multiprocessing graph constructor for CLI enhancement New feature or request
#117 opened Feb 28, 2022 by a-r-j
@a-r-j
YAML Configs for existing methods enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed
#123 opened Mar 6, 2022 by a-r-j
Add additional inputs for CLI enhancement New feature or request good first issue Good for newcomers
#126 opened Mar 8, 2022 by a-r-j
@a-r-j
Support for mmCIF Files enhancement New feature or request help wanted Extra attention is needed
#127 opened Mar 11, 2022 by a-r-j
1
Plot distribution of 3D vectors enhancement New feature or request help wanted Extra attention is needed
#129 opened Mar 13, 2022 by a-r-j
Protein-Ligand Interaction Graphs enhancement New feature or request help wanted Extra attention is needed
#162 opened Apr 20, 2022 by a-r-j
3
Can't plot adjacency matrix of subgraph
#177 opened Jun 5, 2022 by kamurani
8
CLI support for graph transformation 'pipelines' enhancement New feature or request
#195 opened Jul 18, 2022 by kamurani
2
Extended featurisation options enhancement New feature or request
#12 opened Jul 25, 2020 by a-r-j
1 of 6 tasks
doc need to be updated 0 - Priority P0 Highest priority documentation Improvements or additions to documentation
#207 opened Sep 8, 2022 by 1511878618
Networkx to pyg conversion loses track or edge features
#217 opened Oct 18, 2022 by manonreau
1
1
ProteinGraphDataset for pairs of proteins? 1 - Priority P1 High Priority enhancement New feature or request ML
#224 opened Oct 30, 2022 by kamurani
3
Switch to PyDSSP 2 - Priority P2 Medium priority dependencies Pull requests that update a dependency file enhancement New feature or request good first issue Good for newcomers
#243 opened Dec 3, 2022 by a-r-j
Add extras flag for optional imports 1 - Priority P1 High Priority dependencies Pull requests that update a dependency file enhancement New feature or request good first issue Good for newcomers
#248 opened Dec 18, 2022 by a-r-j
mesh with surface descriptors?
#251 opened Jan 11, 2023 by johnnytam100
1
Protein Engineering enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed
#252 opened Jan 24, 2023 by NAEV95
3
Use MOL2 file in graphein.protein.graphs.construct_graph enhancement New feature or request help wanted Extra attention is needed
#259 opened Feb 1, 2023 by KevinCrp
1
LMDB Support for FoldComp databases. enhancement New feature or request help wanted Extra attention is needed ML
#286 opened Mar 27, 2023 by a-r-j
Support for torch 2.0 docker images dependencies Pull requests that update a dependency file
#290 opened Mar 31, 2023 by a-r-j
PDB structure culstering enhancement New feature or request
#314 opened May 3, 2023 by pengzhangzhi
@pengzhangzhi
4
Error in tdc_developability.ipynb notebook
#400 opened Jun 17, 2024 by velocirraptor23
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