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get_coverage_filter: blast filter cutoff #8
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@luca-Wang Sorry for the very late reply. I am busy with some other projects. Now I have some time to update ppsPCP. We use and to ensue high confidence of PAVs and we assume the pan-genome is built with colse related species. |
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Hi,
I am puzzling about which cutoff to use in blast filter step:
if ($coverage < 0.8 or $arr[2] < 90)
or
if ($coverage < 0.8 and $arr[2] < 90)
why you final use the "and" ?
thanks in advance !
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