-
Notifications
You must be signed in to change notification settings - Fork 65
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
emapplot and cnetplot customization (compareCluster) #261
Comments
Thank you for your very good suggestions. |
Thank you so much for your quick reply. I understand that the current built-in functions cannot deal with what I asked, but is there a way to modify these parameters either via ggplot, igraph or other packages? Alternatively, is it possible to edit the plot object after generating the plot, the same way I'd do to edit data frames, matrices, etc? |
It is not easy to modify these parameters or edit the plot object, so we do not provide documentation in this area, and I will update the |
@plcardozo : you indeed came up with some very useful suggestion! Hopefully @huerqiang finds some time to implement these! FYI (since you asked for hints): please note that you can export a network to Cytoscape for further fine-tuning. See e.g. my post here: #220 (comment) Note that I realize you generated a network with pie-plots ( |
@guidohooiveld thanks for your reply. I also hope @huerqiang can implement these features whenever possible. I think I'll try to import them into Cytoscape as you suggested. If I find a way to do so using the compareCluster results, I'll let you know. Thanks for your help =D |
Hi there, I was wondering whether it is possible to customize each arc color for the nodes (or the entire color of the larger nodes, if possible) to a colorblind friendly palette. In addition, I have also had a hard time changing the variable associated with node size from default (number of genes) to adjusted p-value. Finally, the legend related to size is misplaced in my plot. How can I fix all of this, please? Any help would be appreciated.
See an image of what I mean for reference.
The text was updated successfully, but these errors were encountered: