Yash-Haque
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COMPUTER-VISION
Disease-Gene-Network
Consists of potential networks that studies disease-gene association. In short, to learn how an alien organism affect the proteins of the human body.Drug-Discovery-Models
Drug-Target-Network
Studies drug-target-interaction.Important LLM Relevent Repo
knowledge graph
Notes to memorize
Projects I want to do
Stars
Implementation of our papers Joint entity recognition and relation extraction as a multi-head selection problem (Expert Syst. Appl, 2018) and Adversarial training for multi-context joint entity and…
[ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links
EMNLP'22 | MedCLIP: Contrastive Learning from Unpaired Medical Images and Texts
CheXpert NLP tool to extract observations from radiology reports.
Joint Relation Extraction with Hierarchical Reinforcement Learning
Polyp-PVT: Polyp Segmentation with Pyramid Vision Transformers, AIR 2023.
[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
A pytorch implementation of BERT-based relation classification
Self-supervised monocular depth estimation with a vision transformer
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
Code that implements efficient knowledge graph extraction from the textual descriptions
Parameter-Efficient Sparsity Crafting From Dense to Mixture-of-Experts for Instruction Tuning on General Tasks
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
Neural Networks for Protein Sequence Alignment
A knowledge graph RAG app using LangChain and Neo4j.
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
MedViLL official code. (Published IEEE JBHI 2021)
PGCN: Disease gene prioritization by disease and gene embedding through GCN
Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
Genomic language model predicts protein co-regulation and function
RAG example using DSPy, Gradio, FastAPI
How Contextual are Contextualized Word Representations?
Tuning the Finetuning: An exploration of achieving success with QLoRA