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Traceback (most recent call last):
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 595, in
main()
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 558, in main
args = get_args()
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 188, in get_args
args.b1 = fp.read().strip().strip(',')
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0x8b in position 1: ordinal not in range(128)
Any idea what has gone wrong?
Thanks
The text was updated successfully, but these errors were encountered:
Hello,
when running rmats.py with these parameters
file=/a/home/cc/lifesci/kerendanan1/provide/high_quality/C017_SCR1Aligned.sortedByCoord.out.bam
output_dir=/a/home/cc/lifesci/kerendanan1/rmats_turbo/provide_rmats/C017_SCR1/rmats
GTF=/a/home/cc/lifesci/kerendanan1/rmats_turbo/gencode.v31lift37.annotation.gtf
python ~/.conda/envs/rmats_env/bin/rmats.py --b1 $file --gtf $GTF -t paired --readLength 150 --nthread 16 --od output_dir --tmp $output_dir/tmp_output --variable-read-length --novelSS --task both
I get this error:
Traceback (most recent call last):
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 595, in
main()
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 558, in main
args = get_args()
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/bin/rmats.py", line 188, in get_args
args.b1 = fp.read().strip().strip(',')
File "/a/home/cc/lifesci/kerendanan1/.conda/envs/rmats_env/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0x8b in position 1: ordinal not in range(128)
Any idea what has gone wrong?
Thanks
The text was updated successfully, but these errors were encountered: