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run_mimic-cxr-lt_experiments.sh
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run_mimic-cxr-lt_experiments.sh
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#!/bin/bash
echo "Training CE on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ce \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training class-balanced CE on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ce \
--rw_method cb \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training sklearn re-weighted CE on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ce \
--rw_method sklearn \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training focal loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss focal \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training class-balanced focal loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss focal \
--rw_method cb \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training sklearn re-weighted focal loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss focal \
--rw_method sklearn \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training LDAM loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ldam \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training class-balanced LDAM loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ldam \
--rw_method cb \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training class-balanced LDAM loss w/ DRW on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ldam \
--rw_method cb \
--drw \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training sklearn re-weighted LDAM loss on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ldam \
--rw_method sklearn \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training sklearn re-weighted LDAM loss w/ DRW on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ldam \
--rw_method sklearn \
--drw \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
echo "Training mixup on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ce \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
--mixup \
--mixup_alpha 0.2 \
echo "Training balanced mixup on mimic-cxr-lt..."
python src/main.py --data_dir /ssd1/greg/physionet.org/files/mimic-cxr-jpg/2.0.0 \
--out_dir mimic_results \
--dataset mimic-cxr-lt \
--loss ce \
--max_epochs 60 \
--patience 15 \
--batch_size 256 \
--lr 1e-4 \
--bal_mixup \
--mixup_alpha 0.2 \