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6 stars written in Jupyter Notebook
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theislab / single-cell-best-practices

https://www.sc-best-practices.org

Jupyter Notebook 777 183 Updated Nov 4, 2024

ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Jupyter Notebook 335 53 Updated Oct 20, 2024

NVIDIA-Genomics-Research / rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

Jupyter Notebook 324 69 Updated Feb 14, 2023

QuKunLab / SpatialBenchmarking

Jupyter Notebook 108 27 Updated Jun 10, 2022

CostaLab / CrossTalkeR

R package to do the Ligand Receptor Analysis Visualization

Jupyter Notebook 41 10 Updated Nov 14, 2024

lamanno-epfl / velocycle

Bayesian model for RNA velocity estimation of periodic manifolds

Jupyter Notebook 23 1 Updated Jun 25, 2024