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Get ValueError: Unsupported axes YX
when using OME-TIFF for nuclear segmentation
#509
Comments
Hi there, I just wanted to clarify what is happening here. Axes of YX indicates that this is a grayscale image. I am wondering whether this is the case or if it is a planar TIFF being interpreted incorrectly. Are you able to share a sample file? |
Hi, I think I can send over a sample file. But I cannot attach it to github, what is the best way to do this? Thanks, Caleb |
@John-P just chiming in here, I have seen several ome.tiff files where the tiff tag is YX, and they can be either rgb or even multichannel. For example if we use bioformats tools to convert svs files to ome.tiff bioformats2raw followed by raw2ometif this is the case. |
Description
When I try to perform nuclear segmentation using an OME-TIFF file, I get the following error:
ValueError: Unsupported axes
YX
.What I Did
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