Commits

Commits on Dec 9, 2022

fix system-wide db path oschwengers#177
oschwengers
committedDec 9, 2022

Commits on Dec 6, 2022

amend plot color description [skip ci]
oschwengers
committedDec 6, 2022
add alt text to color imgs [skip ci]
oschwengers
committedDec 6, 2022
add plot description [skip ci]
oschwengers
committedDec 6, 2022
bump version to v1.6.1
oschwengers
committedDec 6, 2022
fix pyrodigal training mode on provided training files oschwengers#175
oschwengers
committedDec 6, 2022

Commits on Dec 1, 2022

deactivate Circos max contig limit oschwengers#174
oschwengers
committedDec 1, 2022

Commits on Nov 25, 2022

fix unbound config var oschwengers#174
oschwengers
committedNov 25, 2022

Commits on Nov 24, 2022

bump version to v1.6.0
oschwengers
committedNov 24, 2022
Improve tRNA products oschwengers#170 (oschwengers#173 )
oschwengers
committedNov 24, 2022

Commits on Nov 18, 2022

harmonize outputs
oschwengers
committedNov 18, 2022

Commits on Nov 17, 2022

refactor plotting code oschwengers#163
oschwengers
committedNov 17, 2022
improve GC content and skew histograms oschwengers#163
oschwengers
committedNov 17, 2022
move config parameter to input/output block
oschwengers
committedNov 17, 2022

Commits on Nov 16, 2022

Add circular genome plots via Circos (oschwengers#166 )

oschwengers
and
JaLuebke
committedNov 16, 2022

Commits on Nov 3, 2022

replace Prodigal by Pyrodigal as a faster and maintained alternative (oschwengers#165 )
oschwengers
committedNov 3, 2022

Commits on Oct 20, 2022

remove duplicated test genome GCF_002151505.1
oschwengers
committedOct 20, 2022

Commits on Oct 13, 2022

update readme
oschwengers
committedOct 13, 2022

Commits on Oct 5, 2022

bump tRNAscan-SE dependency to v2.0.11 oschwengers#150
oschwengers
committedOct 5, 2022

Commits on Oct 4, 2022

bump amrfinder dependency version to v3.10.42 oschwengers#154
oschwengers
committedOct 4, 2022

Commits on Sep 28, 2022

add min software version to db-versions
oschwengers
committedSep 28, 2022

Commits on Sep 27, 2022

enhance AMRFinder database update error msg#151
oschwengers
committedSep 27, 2022

Commits on Sep 23, 2022

remove tRNA nt assertion oschwengers#150
oschwengers
committedSep 23, 2022

Commits on Sep 20, 2022

Commits on Sep 9, 2022

add --debug to readme and templates oschwengers#137
oschwengers
committedSep 9, 2022
update readme
oschwengers
committedSep 9, 2022
introduce debug option oschwengers#137 (oschwengers#141 )
oschwengers
committedSep 9, 2022
Obey number of available CPUs instead of CPU count closes oschwengers#135 (oschwengers#139 )
oschwengers
committedSep 9, 2022

Commits on Sep 8, 2022

Skip pseudogenes with wrong blastx hsp hits (oschwengers#130 )
jhahnfeld
committedSep 8, 2022

Commits on Sep 7, 2022

Merge branch 'main' of github.com:oschwengers/bakta into main
oschwengers
committedSep 7, 2022
expand CI tests on PR to edited and synchronize
oschwengers
committedSep 7, 2022

Commits on Sep 6, 2022

Fix empty elongated pseudogene nucleotide sequences

jhahnfeld
authored and
oschwengers
committedSep 6, 2022