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Problem with using FEniCS #95

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sverek opened this issue Oct 24, 2020 · 0 comments
Open

Problem with using FEniCS #95

sverek opened this issue Oct 24, 2020 · 0 comments

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@sverek
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sverek commented Oct 24, 2020

If I open a new REPL and do ] build FEniCS and then using FEniCS everything works fine. However, if I just do using FEniCS from the start I get this error:

julia> using FEniCS [ Info: Installing fenics via the Conda fenics=2019.1.0 package... [ Info: Runningconda config --add channels conda-forge --file /Users/sverek/.julia/conda/3/condarc-julia.yml --forcein root environment Warning: 'conda-forge' already in 'channels' list, moving to the top [ Info: Runningconda install -y fenics=2019.1.0` in root environment
Collecting package metadata (current_repodata.json): done
Solving environment: done

All requested packages already installed.

ERROR: InitError: PyError (PyImport_ImportModule) <class 'RuntimeError'>
RuntimeError('Could not find DOLFIN pkg-config file. Please make sure appropriate paths are set.')
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/fenics/init.py", line 7, in
from dolfin import *
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/init.py", line 142, in
from .fem.assembling import (assemble, assemble_system, assemble_multimesh,
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/fem/assembling.py", line 34, in
from dolfin.fem.form import Form
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/fem/form.py", line 12, in
from dolfin.jit.jit import dolfin_pc, ffc_jit
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/jit/jit.py", line 18, in
raise RuntimeError("Could not find DOLFIN pkg-config file. Please make sure appropriate paths are set.")

Stacktrace:
[1] pyimport(::String) at /Users/sverek/.julia/packages/PyCall/BcTLp/src/PyCall.jl:547
[2] pyimport_conda(::String, ::String, ::String) at /Users/sverek/.julia/packages/PyCall/BcTLp/src/PyCall.jl:711
[3] init() at /Users/sverek/.julia/packages/FEniCS/LQXLe/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_search_from_serialized(::Base.PkgId, ::String) at ./loading.jl:782
[6] _require(::Base.PkgId) at ./loading.jl:1007
[7] require(::Base.PkgId) at ./loading.jl:928
[8] require(::Module, ::Symbol) at ./loading.jl:923
during initialization of module FEniCS
caused by [exception 1]
PyError (PyImport_ImportModule) <class 'RuntimeError'>
RuntimeError('Could not find DOLFIN pkg-config file. Please make sure appropriate paths are set.')
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/fenics/init.py", line 7, in
from dolfin import *
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/init.py", line 142, in
from .fem.assembling import (assemble, assemble_system, assemble_multimesh,
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/fem/assembling.py", line 34, in
from dolfin.fem.form import Form
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/fem/form.py", line 12, in
from dolfin.jit.jit import dolfin_pc, ffc_jit
File "/Users/sverek/.julia/conda/3/lib/python3.7/site-packages/dolfin/jit/jit.py", line 18, in
raise RuntimeError("Could not find DOLFIN pkg-config file. Please make sure appropriate paths are set.")

Stacktrace:
[1] pyimport(::String) at /Users/sverek/.julia/packages/PyCall/BcTLp/src/PyCall.jl:547
[2] pyimport_conda(::String, ::String, ::String) at /Users/sverek/.julia/packages/PyCall/BcTLp/src/PyCall.jl:705
[3] init() at /Users/sverek/.julia/packages/FEniCS/LQXLe/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_search_from_serialized(::Base.PkgId, ::String) at ./loading.jl:782
[6] _require(::Base.PkgId) at ./loading.jl:1007
[7] require(::Base.PkgId) at ./loading.jl:928
[8] require(::Module, ::Symbol) at ./loading.jl:923
`

Same behavior with FEniCS or FEniCS#master

Julia Version 1.5.2
Commit 539f3ce943 (2020-09-23 23:17 UTC)
Platform Info:
OS: macOS (x86_64-apple-darwin18.7.0)
CPU: Intel(R) Core(TM) i7-8569U CPU @ 2.80GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)

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