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Commits on Aug 7, 2024

• Added hashlib module - md5 module is deprecated

  baileyp1

  committed
  9896556

Commits on Aug 2, 2024

• Modified code to add target files to new paftol_merged db

  baileyp1

  committed
  4cfc1ca

• -

  baileyp1

  committed
  e9db566

Commits on Aug 5, 2021

• Corrected new mistake made in the insertInputSequenceList() method

  baileyp1

  committed
  cafa793

Commits on Aug 3, 2021

• Testing db connection code

  baileyp1

  committed
  88319e0

• Testing db connection code

  baileyp1

  committed
  8ccd8dc

• Testing db connection code

  baileyp1

  committed
  d75cca7

Commits on Aug 2, 2021

• Testing db connection code

  baileyp1

  committed
  5337ca7

• Testing db connection code

  baileyp1

  committed
  b880b5a

• Testing db connection code

  baileyp1

  committed
  884905f

• Testing db connection code

  baileyp1

  committed
  c0c3c81

• Testing db connection code

  baileyp1

  committed
  7abd9ad

• Introduced RecoveryRun table and fields for tracking different gene recovery runs for the same data set and sample

  baileyp1

  committed
  14bf11f

Commits on Jul 29, 2021

• Introduced RecoveryRun table and fields for tracking different gene recovery runs for the same data set and sample

  baileyp1

  committed
  e21bf11

• Introduced RecoveryRun table and fields for tracking different gene recovery runs for the same data set and sample

  baileyp1

  committed
  d059ebb

• Introduced RecoveryRun table and fields for tracking different gene recovery runs for the same data set and sample

  baileyp1

  committed
  7cc5b04

Commits on Jun 29, 2021

• Corrected error in getting idSequencing for PAFTOL data

  baileyp1

  committed
  c7f78cc

• Corrected error in getting idSequencing for PAFTOl data

  baileyp1

  committed
  acc818c

• Further update for retreiving GAP idsSequencing id from paftol db

  baileyp1

  committed
  cb83631

• Further update for retreiving GAP idsSequencing id from paftol db

  baileyp1

  committed
  839a948

Commits on Jun 17, 2021

• Made database updates compatible with GAP and unannotated genome data; tried to make connection to db for reliable

  baileyp1

  committed
  a8852ed

Commits on May 30, 2021

• Updated to iterate twice over blast results to get gene names then locus ids

  baileyp1

  committed
  e11ce49

Commits on May 19, 2021

• Changes made to retry db connection it it fails

  baileyp1

  committed
  197ea43

• Removed read coverage conditional

  baileyp1

  committed
  726f86b

Commits on May 12, 2021

• Testing adding a coverage cut off for each contig in contigList

  baileyp1

  committed
  21d3858

• Testing adding a coverage cut off for each contig in contigList

  baileyp1

  committed
  b661afc

Commits on May 8, 2021

• Testing adding a coverage cut off for each contig in contigList

  baileyp1

  committed
  6c9d34a

Commits on May 6, 2021

• Added Spades flags to the recoverSeqs program

  baileyp1

  committed
  39459f4

Commits on Apr 7, 2021

• Merge pull request #6 from RBGKew/single_end

  baileyp1

  authored
  547af6a

Commits on Apr 6, 2021

• Update __init__.py

  kleempoel

  committed
  0729f3b

Commits on Mar 26, 2021

• Single End TargetRecoverer

  kleempoel

  committed
  583450a

Commits on Mar 22, 2021

• Merge pull request #3 from RBGKew/Updated_Documentation

  baileyp1

  authored
  4920639

• Merge pull request #5 from RBGKew/single_end

  baileyp1

  authored
  2a83f3c

Commits on Mar 19, 2021

• Update __init__.py

  kleempoel

  committed
  56424de

• Merge branch 'master' into Updated_Documentation

  kleempoel

  authored
  eca3aeb

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