Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MONAI Label Pathology Tutorial (monailabel_HelloWorld_radiology_3dslicer) #1704

Open
jesamir opened this issue Jun 12, 2024 · 0 comments
Open

Comments

@jesamir
Copy link

jesamir commented Jun 12, 2024

Describe the bug
The pathology tutorial states that the MONAI Label extension works with versions of QuPath <=0.5.0, but I found it not working with version 0.5.0. I utilized version 0.4.3, and the extension was able to work with QuPath.

Server logs
If applicable attach 100+ lines of monailabel server logs which covers the error trace etc...

To Reproduce
Steps to reproduce the behavior:

  1. Go to tutorials/monailabel
    /monailabel_pathology_nuclei_segmentation_QuPath.ipynb

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
QuPathError

Environment

Ensuring you use the relevant python executable, please paste the output of:

python -c 'import monai; monai.config.print_debug_info()'

Additional context
Add any other context about the problem here.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant